To cite scphaser in publications use:

Daniel Edsgärd et al., scphaser: Haplotype Inference Using Single-Cell RNA-Seq Data, Bioinformatics, 2016

Corresponding BibTeX entry:

  @Article{,
    title = {scphaser: Haplotype Inference Using Single-Cell RNA-Seq
      Data},
    author = {Daniel Edsgärd and Björn Reinius and Rickard Sandberg},
    journal = {Bioinformatics},
    year = {2016},
    volume = {TBD},
    number = {TBD},
    pages = {TBD},
    url = {http://dx.doi.org/10.1093/bioinformatics/btw484},
  }