seriation: Infrastructure for Ordering Objects Using Seriation

Infrastructure for seriation with an implementation of several seriation/sequencing techniques to reorder matrices, dissimilarity matrices, and dendrograms. Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, and visual assessment of cluster tendency plots (VAT and iVAT).

Version: 1.2-1
Depends: R (≥ 2.14.0)
Imports: TSP, qap, grid, cluster, gclus, dendextend, colorspace, MASS, gplots, registry, methods, stats, grDevices
Suggests: biclust, testthat, DendSer, GA
Published: 2016-08-07
Author: Michael Hahsler [aut, cre, cph], Christian Buchta [aut, cph], Kurt Hornik [aut, cph], Fionn Murtagh [ctb, cph], Michael Brusco [ctb, cph], Stephanie Stahl [ctb, cph], Hans-Friedrich Koehn [ctb, cph]
Maintainer: Michael Hahsler <mhahsler at>
License: GPL-3
Copyright: The code in src/bea.f is Copyright (C) 1991 F. Murtagh; src/bbwrcg.f, src/arsa.f and src/bburcg.f are Copyright (C) 2005 M. Brusco, H.F. Koehn, and S. Stahl. All other code is Copyright (C) Michael Hahsler, Christian Buchta, and Kurt Hornik.
NeedsCompilation: yes
Classification/ACM: G.1.6, G.2.1, G.4
Citation: seriation citation info
Materials: README
In views: Cluster, Graphics, Multivariate
CRAN checks: seriation results


Reference manual: seriation.pdf
Vignettes: An Introduction to the R package seriation
Package source: seriation_1.2-1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Mavericks binaries: r-release: seriation_1.2-1.tgz, r-oldrel: seriation_1.2-1.tgz
Old sources: seriation archive

Reverse dependencies:

Reverse depends: ClusteredMutations, DendSer, mpMap
Reverse imports: arulesViz, corrgram, corrr, DeLorean, heatmaply, matie, pergola, qlcVisualize
Reverse suggests: ChemoSpec, corrplot, dendextend, dendsort, disclapmix, flexclust
Reverse enhances: relations


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