CRAN Package Check Results for Package zipfR

Last updated on 2016-10-25 23:47:58.

Check Details

Version: 0.6-6
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘zipfR.begin.plot’
    Found the platform-specific devices:
     ‘X11’ ‘quartz’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    EVm.spc: no visible global function definition for ‘dbinom’
    Rbeta: no visible global function definition for ‘pbeta’
    Rbeta.inv: no visible global function definition for ‘qbeta’
    Rgamma: no visible global function definition for ‘pgamma’
    Rgamma.inv: no visible global function definition for ‘qgamma’
    confint.lnre : <anonymous>: no visible global function definition for
     ‘sd’
    confint.lnre : <anonymous>: no visible global function definition for
     ‘qnorm’
    confint.lnre : <anonymous>: no visible global function definition for
     ‘median’
    confint.lnre: no visible global function definition for ‘hist’
    confint.lnre: no visible global function definition for ‘abline’
    confint.lnre: no visible global function definition for ‘lines’
    confint.lnre: no visible global function definition for ‘density’
    estimate.model.lnre: no visible global function definition for ‘nlm’
    estimate.model.lnre: no visible global function definition for ‘optim’
    estimate.model.lnre.fzm : compute.B: no visible global function
     definition for ‘uniroot’
    estimate.model.lnre.fzm: no visible global function definition for
     ‘optim’
    estimate.model.lnre.fzm: no visible global function definition for
     ‘nlm’
    estimate.model.lnre.zm : compute.B: no visible global function
     definition for ‘uniroot’
    estimate.model.lnre.zm: no visible global function definition for ‘nlm’
    lnre.bootstrap: no visible global function definition for
     ‘txtProgressBar’
    lnre.bootstrap: no visible global function definition for ‘is’
    lnre.bootstrap: no visible global function definition for
     ‘setTxtProgressBar’
    lnre.goodness.of.fit: no visible global function definition for
     ‘pchisq’
    plot.spc: no visible global function definition for ‘barplot’
    plot.spc: no visible global function definition for ‘plot’
    plot.spc: no visible global function definition for ‘qnorm’
    plot.spc: no visible global function definition for ‘segments’
    plot.spc: no visible global function definition for ‘lines’
    plot.tfl : <anonymous>: no visible global function definition for
     ‘na.omit’
    plot.tfl: no visible global function definition for ‘plot’
    plot.tfl: no visible global function definition for ‘points’
    plot.vgc: no visible global function definition for ‘plot’
    plot.vgc: no visible global function definition for ‘qnorm’
    plot.vgc: no visible global function definition for ‘segments’
    plot.vgc: no visible global function definition for ‘lines’
    plot.vgc: no visible global function definition for ‘abline’
    read.spc: no visible global function definition for ‘read.delim’
    read.tfl: no visible global function definition for ‘read.delim’
    read.vgc: no visible global function definition for ‘read.delim’
    rlnre.lnre: no visible global function definition for ‘runif’
    summary.tfl: no visible global function definition for ‘median’
    write.spc: no visible global function definition for ‘write.table’
    write.tfl: no visible global function definition for ‘write.table’
    write.vgc: no visible global function definition for ‘write.table’
    zipfR.begin.plot: no visible global function definition for ‘dev.off’
    zipfR.begin.plot: no visible global function definition for ‘X11’
    zipfR.begin.plot: no visible global function definition for ‘quartz’
    zipfR.begin.plot: no visible global function definition for ‘par’
    zipfR.begin.plot: no visible global function definition for ‘png’
    zipfR.begin.plot: no visible global function definition for
     ‘postscript’
    zipfR.begin.plot: no visible global function definition for ‘pdf’
    zipfR.begin.plot: no visible global function definition for ‘dev.cur’
    zipfR.begin.plot: no visible binding for global variable ‘par’
    zipfR.end.plot: no visible global function definition for ‘dev.off’
    zipfR.tflsplit: no visible global function definition for ‘rhyper’
    Undefined global functions or variables:
     X11 abline barplot dbinom density dev.cur dev.off hist is lines
     median na.omit nlm optim par pbeta pchisq pdf pgamma plot png points
     postscript qbeta qgamma qnorm quartz read.delim rhyper runif sd
     segments setTxtProgressBar txtProgressBar uniroot write.table
    Consider adding
     importFrom("grDevices", "X11", "dev.cur", "dev.off", "pdf", "png",
     "postscript", "quartz")
     importFrom("graphics", "abline", "barplot", "hist", "lines", "par",
     "plot", "points", "segments")
     importFrom("methods", "is")
     importFrom("stats", "dbinom", "density", "median", "na.omit", "nlm",
     "optim", "pbeta", "pchisq", "pgamma", "qbeta", "qgamma",
     "qnorm", "rhyper", "runif", "sd", "uniroot")
     importFrom("utils", "read.delim", "setTxtProgressBar",
     "txtProgressBar", "write.table")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.6-6
Check: Rd line widths
Result: NOTE
    Rd file 'lnre_bootstrap.Rd':
     \usage lines wider than 90 characters:
     lnre.bootstrap(model, N, ESTIMATOR, STATISTIC, replicates=100, simplify=FALSE, verbose=TRUE, ...)
    
    Rd file 'plot_spc.Rd':
     \examples lines wider than 100 characters:
     plot(zm.spc,log="x",main="Expected Spectrum with Confidence Interval",xlab="spectrum elements",ylab="expected type counts")
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.6-6
Check: R code for possible problems
Result: NOTE
    EVm.spc: no visible global function definition for 'dbinom'
    Rbeta: no visible global function definition for 'pbeta'
    Rbeta.inv: no visible global function definition for 'qbeta'
    Rgamma: no visible global function definition for 'pgamma'
    Rgamma.inv: no visible global function definition for 'qgamma'
    confint.lnre : <anonymous>: no visible global function definition for
     'sd'
    confint.lnre : <anonymous>: no visible global function definition for
     'qnorm'
    confint.lnre : <anonymous>: no visible global function definition for
     'median'
    confint.lnre: no visible global function definition for 'hist'
    confint.lnre: no visible global function definition for 'abline'
    confint.lnre: no visible global function definition for 'lines'
    confint.lnre: no visible global function definition for 'density'
    estimate.model.lnre: no visible global function definition for 'nlm'
    estimate.model.lnre: no visible global function definition for 'optim'
    estimate.model.lnre.fzm : compute.B: no visible global function
     definition for 'uniroot'
    estimate.model.lnre.fzm: no visible global function definition for
     'optim'
    estimate.model.lnre.fzm: no visible global function definition for
     'nlm'
    estimate.model.lnre.zm : compute.B: no visible global function
     definition for 'uniroot'
    estimate.model.lnre.zm: no visible global function definition for 'nlm'
    lnre.bootstrap: no visible global function definition for
     'txtProgressBar'
    lnre.bootstrap: no visible global function definition for 'is'
    lnre.bootstrap: no visible global function definition for
     'setTxtProgressBar'
    lnre.goodness.of.fit: no visible global function definition for
     'pchisq'
    plot.spc: no visible global function definition for 'barplot'
    plot.spc: no visible global function definition for 'plot'
    plot.spc: no visible global function definition for 'qnorm'
    plot.spc: no visible global function definition for 'segments'
    plot.spc: no visible global function definition for 'lines'
    plot.tfl : <anonymous>: no visible global function definition for
     'na.omit'
    plot.tfl: no visible global function definition for 'plot'
    plot.tfl: no visible global function definition for 'points'
    plot.vgc: no visible global function definition for 'plot'
    plot.vgc: no visible global function definition for 'qnorm'
    plot.vgc: no visible global function definition for 'segments'
    plot.vgc: no visible global function definition for 'lines'
    plot.vgc: no visible global function definition for 'abline'
    read.spc: no visible global function definition for 'read.delim'
    read.tfl: no visible global function definition for 'read.delim'
    read.vgc: no visible global function definition for 'read.delim'
    rlnre.lnre: no visible global function definition for 'runif'
    summary.tfl: no visible global function definition for 'median'
    write.spc: no visible global function definition for 'write.table'
    write.tfl: no visible global function definition for 'write.table'
    write.vgc: no visible global function definition for 'write.table'
    zipfR.begin.plot: no visible global function definition for 'dev.off'
    zipfR.begin.plot: no visible global function definition for 'X11'
    zipfR.begin.plot: no visible global function definition for 'par'
    zipfR.begin.plot: no visible global function definition for 'png'
    zipfR.begin.plot: no visible global function definition for
     'postscript'
    zipfR.begin.plot: no visible global function definition for 'pdf'
    zipfR.begin.plot: no visible global function definition for 'dev.cur'
    zipfR.begin.plot: no visible binding for global variable 'par'
    zipfR.end.plot: no visible global function definition for 'dev.off'
    zipfR.tflsplit: no visible global function definition for 'rhyper'
    Undefined global functions or variables:
     X11 abline barplot dbinom density dev.cur dev.off hist is lines
     median na.omit nlm optim par pbeta pchisq pdf pgamma plot png points
     postscript qbeta qgamma qnorm read.delim rhyper runif sd segments
     setTxtProgressBar txtProgressBar uniroot write.table
    Consider adding
     importFrom("grDevices", "X11", "dev.cur", "dev.off", "pdf", "png",
     "postscript")
     importFrom("graphics", "abline", "barplot", "hist", "lines", "par",
     "plot", "points", "segments")
     importFrom("methods", "is")
     importFrom("stats", "dbinom", "density", "median", "na.omit", "nlm",
     "optim", "pbeta", "pchisq", "pgamma", "qbeta", "qgamma",
     "qnorm", "rhyper", "runif", "sd", "uniroot")
     importFrom("utils", "read.delim", "setTxtProgressBar",
     "txtProgressBar", "write.table")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 0.6-6
Check: R code for possible problems
Result: NOTE
    EVm.spc: no visible global function definition for ‘dbinom’
    Rbeta: no visible global function definition for ‘pbeta’
    Rbeta.inv: no visible global function definition for ‘qbeta’
    Rgamma: no visible global function definition for ‘pgamma’
    Rgamma.inv: no visible global function definition for ‘qgamma’
    confint.lnre : <anonymous>: no visible global function definition for
     ‘sd’
    confint.lnre : <anonymous>: no visible global function definition for
     ‘qnorm’
    confint.lnre : <anonymous>: no visible global function definition for
     ‘median’
    confint.lnre: no visible global function definition for ‘hist’
    confint.lnre: no visible global function definition for ‘abline’
    confint.lnre: no visible global function definition for ‘lines’
    confint.lnre: no visible global function definition for ‘density’
    estimate.model.lnre: no visible global function definition for ‘nlm’
    estimate.model.lnre: no visible global function definition for ‘optim’
    estimate.model.lnre.fzm : compute.B: no visible global function
     definition for ‘uniroot’
    estimate.model.lnre.fzm: no visible global function definition for
     ‘optim’
    estimate.model.lnre.fzm: no visible global function definition for
     ‘nlm’
    estimate.model.lnre.zm : compute.B: no visible global function
     definition for ‘uniroot’
    estimate.model.lnre.zm: no visible global function definition for ‘nlm’
    lnre.bootstrap: no visible global function definition for
     ‘txtProgressBar’
    lnre.bootstrap: no visible global function definition for ‘is’
    lnre.bootstrap: no visible global function definition for
     ‘setTxtProgressBar’
    lnre.goodness.of.fit: no visible global function definition for
     ‘pchisq’
    plot.spc: no visible global function definition for ‘barplot’
    plot.spc: no visible global function definition for ‘plot’
    plot.spc: no visible global function definition for ‘qnorm’
    plot.spc: no visible global function definition for ‘segments’
    plot.spc: no visible global function definition for ‘lines’
    plot.tfl : <anonymous>: no visible global function definition for
     ‘na.omit’
    plot.tfl: no visible global function definition for ‘plot’
    plot.tfl: no visible global function definition for ‘points’
    plot.vgc: no visible global function definition for ‘plot’
    plot.vgc: no visible global function definition for ‘qnorm’
    plot.vgc: no visible global function definition for ‘segments’
    plot.vgc: no visible global function definition for ‘lines’
    plot.vgc: no visible global function definition for ‘abline’
    read.spc: no visible global function definition for ‘read.delim’
    read.tfl: no visible global function definition for ‘read.delim’
    read.vgc: no visible global function definition for ‘read.delim’
    rlnre.lnre: no visible global function definition for ‘runif’
    summary.tfl: no visible global function definition for ‘median’
    write.spc: no visible global function definition for ‘write.table’
    write.tfl: no visible global function definition for ‘write.table’
    write.vgc: no visible global function definition for ‘write.table’
    zipfR.begin.plot: no visible global function definition for ‘dev.off’
    zipfR.begin.plot: no visible global function definition for ‘X11’
    zipfR.begin.plot: no visible global function definition for ‘quartz’
    zipfR.begin.plot: no visible global function definition for ‘par’
    zipfR.begin.plot: no visible global function definition for ‘png’
    zipfR.begin.plot: no visible global function definition for
     ‘postscript’
    zipfR.begin.plot: no visible global function definition for ‘pdf’
    zipfR.begin.plot: no visible global function definition for ‘dev.cur’
    zipfR.begin.plot: no visible binding for global variable ‘par’
    zipfR.end.plot: no visible global function definition for ‘dev.off’
    zipfR.tflsplit: no visible global function definition for ‘rhyper’
    Undefined global functions or variables:
     X11 abline barplot dbinom density dev.cur dev.off hist is lines
     median na.omit nlm optim par pbeta pchisq pdf pgamma plot png points
     postscript qbeta qgamma qnorm quartz read.delim rhyper runif sd
     segments setTxtProgressBar txtProgressBar uniroot write.table
    Consider adding
     importFrom("grDevices", "X11", "dev.cur", "dev.off", "pdf", "png",
     "postscript", "quartz")
     importFrom("graphics", "abline", "barplot", "hist", "lines", "par",
     "plot", "points", "segments")
     importFrom("methods", "is")
     importFrom("stats", "dbinom", "density", "median", "na.omit", "nlm",
     "optim", "pbeta", "pchisq", "pgamma", "qbeta", "qgamma",
     "qnorm", "rhyper", "runif", "sd", "uniroot")
     importFrom("utils", "read.delim", "setTxtProgressBar",
     "txtProgressBar", "write.table")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavor: r-release-osx-x86_64-mavericks