Identifies and scores possible Transcription Factor Binding Sites and allows for FDR analysis and pruning. It supports splitting of sequences based on size or a specified GFF, grouping by G+C content, and specification of Markov model order. The heavy lifting is done in C while all results are made available via R.
| Version: | 0.3.5 |
| Depends: | stats |
| Imports: | rphast, methods |
| Published: | 2016-08-16 |
| Author: | Nicholas Peterson, Andre Martins, Melissa Hubisz, and Adam Siepel |
| Maintainer: | Melissa Hubisz <mjhubisz at cornell.edu> |
| License: | BSD_3_clause + file LICENSE |
| Copyright: | Copyright (c) 2002-2016 University of California, Cornell University, Cold Spring Harbor Laboratory. |
| URL: | http://compgen.cshl.edu/rtfbs |
| NeedsCompilation: | yes |
| Materials: | ChangeLog |
| CRAN checks: | rtfbs results |
| Reference manual: | rtfbs.pdf |
| Vignettes: |
rtfbs |
| Package source: | rtfbs_0.3.5.tar.gz |
| Windows binaries: | r-devel: rtfbs_0.3.5.zip, r-release: rtfbs_0.3.5.zip, r-oldrel: rtfbs_0.3.5.zip |
| OS X Mavericks binaries: | r-release: rtfbs_0.3.5.tgz, r-oldrel: rtfbs_0.3.5.tgz |
| Old sources: | rtfbs archive |
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