Last updated on 2016-12-28 23:47:22.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.2 | 3.67 | 57.83 | 61.50 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.1.2 | 3.74 | 57.36 | 61.10 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.1.2 | 132.95 | NOTE | --no-stop-on-test-error | ||
| r-devel-linux-x86_64-fedora-gcc | 1.1.2 | 151.04 | NOTE | --no-stop-on-test-error | ||
| r-devel-macos-x86_64-clang | 1.1.2 | 96.26 | NOTE | --no-stop-on-test-error | ||
| r-devel-windows-ix86+x86_64 | 1.1.2 | 14.00 | 94.00 | 108.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1.2 | 3.03 | 52.32 | 55.36 | NOTE | |
| r-patched-solaris-sparc | 1.1.2 | 668.10 | NOTE | |||
| r-patched-solaris-x86 | 1.1.2 | 139.70 | NOTE | |||
| r-release-linux-x86_64 | 1.1.2 | 3.24 | 51.46 | 54.71 | NOTE | |
| r-release-osx-x86_64-mavericks | 1.1.2 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.1.2 | 13.00 | 87.00 | 100.00 | NOTE | |
| r-oldrel-windows-ix86+x86_64 | 1.1.2 | 9.00 | 84.00 | 93.00 | NOTE |
Version: 1.1.2
Check: dependencies in R code
Result: NOTE
'library' or 'require' calls in package code:
‘R.devices’ ‘R.filesets’ ‘R.methodsS3’ ‘R.oo’ ‘aroma.affymetrix’
‘aroma.cn’ ‘aroma.core’ ‘aroma.light’ ‘matrixStats’ ‘snowfall’
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Unexported object imported by a ':::' call: ‘cghseg:::segmeanCO’
See the note in ?`:::` about the use of this operator.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.1.2
Check: R code for possible problems
Result: NOTE
.varregtimescount: no visible global function definition for ‘var’
CGHSEGaroma: no visible global function definition for ‘read.csv’
CGHSEGaroma : <anonymous>: no visible global function definition for
‘points’
CGHSEGaroma : <anonymous>: no visible global function definition for
‘lines’
CGHSEGaroma : <anonymous>: no visible global function definition for
‘write.table’
CGHcall: no visible global function definition for ‘mad’
CGHcall: no visible global function definition for ‘optim’
HDlarsbivariate: no visible binding for global variable ‘sd’
HDlarsbivariate2: no visible binding for global variable ‘sd’
Lmethod: no visible global function definition for ‘lm’
PELT: no visible global function definition for ‘lines’
PELTaroma: no visible global function definition for ‘read.csv’
PELTaroma : <anonymous>: no visible global function definition for
‘points’
PELTaroma : <anonymous>: no visible global function definition for
‘lines’
PELTaroma : <anonymous>: no visible global function definition for
‘write.table’
SignalNormalization: no visible global function definition for
‘read.csv’
SingleStudyPlot: no visible global function definition for ‘par’
SingleStudyPlot: no visible global function definition for ‘axis’
SingleStudyPlot: no visible global function definition for ‘points’
bestSegmentationBM: no visible global function definition for ‘lm’
cghseg: no visible global function definition for ‘var’
cghseg: no visible global function definition for ‘lines’
cnSegCallingProcess: no visible global function definition for
‘read.csv’
cnSegCallingProcess : <anonymous>: no visible global function
definition for ‘points’
cnSegCallingProcess : <anonymous>: no visible global function
definition for ‘lines’
cnSegCallingProcess : <anonymous>: no visible global function
definition for ‘write.table’
getCopyNumberSignal: no visible global function definition for
‘read.csv’
getFracBSignal: no visible global function definition for ‘read.csv’
getSymFracBSignal: no visible global function definition for ‘read.csv’
markerSelection: no visible global function definition for ‘read.csv’
postsegnormalize: no visible global function definition for ‘median’
segFracBSignal: no visible global function definition for ‘read.csv’
segFracBSignal : <anonymous>: no visible global function definition for
‘points’
segFracBSignal : <anonymous>: no visible global function definition for
‘lines’
segFracBSignal : <anonymous>: no visible global function definition for
‘write.table’
tumorboostPlot: no visible global function definition for ‘head’
tumorboostPlot: no visible global function definition for ‘par’
tumorboostPlot: no visible global function definition for ‘axis’
tumorboostPlot: no visible global function definition for ‘points’
Undefined global functions or variables:
axis head lines lm mad median optim par points read.csv sd var
write.table
Consider adding
importFrom("graphics", "axis", "lines", "par", "points")
importFrom("stats", "lm", "mad", "median", "optim", "sd", "var")
importFrom("utils", "head", "read.csv", "write.table")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64
Version: 1.1.2
Flags: --no-stop-on-test-error
Check: dependencies in R code
Result: NOTE
'library' or 'require' calls in package code:
‘R.devices’ ‘R.filesets’ ‘R.methodsS3’ ‘R.oo’ ‘aroma.affymetrix’
‘aroma.cn’ ‘aroma.core’ ‘aroma.light’ ‘matrixStats’ ‘snowfall’
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Unexported object imported by a ':::' call: ‘cghseg:::segmeanCO’
See the note in ?`:::` about the use of this operator.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang
Version: 1.1.2
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
.varregtimescount: no visible global function definition for ‘var’
CGHSEGaroma: no visible global function definition for ‘read.csv’
CGHSEGaroma : <anonymous>: no visible global function definition for
‘points’
CGHSEGaroma : <anonymous>: no visible global function definition for
‘lines’
CGHSEGaroma : <anonymous>: no visible global function definition for
‘write.table’
CGHcall: no visible global function definition for ‘mad’
CGHcall: no visible global function definition for ‘optim’
HDlarsbivariate: no visible binding for global variable ‘sd’
HDlarsbivariate2: no visible binding for global variable ‘sd’
Lmethod: no visible global function definition for ‘lm’
PELT: no visible global function definition for ‘lines’
PELTaroma: no visible global function definition for ‘read.csv’
PELTaroma : <anonymous>: no visible global function definition for
‘points’
PELTaroma : <anonymous>: no visible global function definition for
‘lines’
PELTaroma : <anonymous>: no visible global function definition for
‘write.table’
SignalNormalization: no visible global function definition for
‘read.csv’
SingleStudyPlot: no visible global function definition for ‘par’
SingleStudyPlot: no visible global function definition for ‘axis’
SingleStudyPlot: no visible global function definition for ‘points’
bestSegmentationBM: no visible global function definition for ‘lm’
cghseg: no visible global function definition for ‘var’
cghseg: no visible global function definition for ‘lines’
cnSegCallingProcess: no visible global function definition for
‘read.csv’
cnSegCallingProcess : <anonymous>: no visible global function
definition for ‘points’
cnSegCallingProcess : <anonymous>: no visible global function
definition for ‘lines’
cnSegCallingProcess : <anonymous>: no visible global function
definition for ‘write.table’
getCopyNumberSignal: no visible global function definition for
‘read.csv’
getFracBSignal: no visible global function definition for ‘read.csv’
getSymFracBSignal: no visible global function definition for ‘read.csv’
markerSelection: no visible global function definition for ‘read.csv’
postsegnormalize: no visible global function definition for ‘median’
segFracBSignal: no visible global function definition for ‘read.csv’
segFracBSignal : <anonymous>: no visible global function definition for
‘points’
segFracBSignal : <anonymous>: no visible global function definition for
‘lines’
segFracBSignal : <anonymous>: no visible global function definition for
‘write.table’
tumorboostPlot: no visible global function definition for ‘head’
tumorboostPlot: no visible global function definition for ‘par’
tumorboostPlot: no visible global function definition for ‘axis’
tumorboostPlot: no visible global function definition for ‘points’
Undefined global functions or variables:
axis head lines lm mad median optim par points read.csv sd var
write.table
Consider adding
importFrom("graphics", "axis", "lines", "par", "points")
importFrom("stats", "lm", "mad", "median", "optim", "sd", "var")
importFrom("utils", "head", "read.csv", "write.table")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang