CRAN Package Check Results for Package PIGE

Last updated on 2016-12-28 23:47:27.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9 2.41 44.41 46.83 NOTE
r-devel-linux-x86_64-debian-gcc 0.9 2.84 42.16 45.00 NOTE
r-devel-linux-x86_64-fedora-clang 0.9 73.06 NOTE --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 0.9 74.45 NOTE --no-stop-on-test-error
r-devel-macos-x86_64-clang 0.9 55.35 NOTE --no-stop-on-test-error
r-devel-windows-ix86+x86_64 0.9 11.00 70.00 81.00 NOTE
r-patched-linux-x86_64 0.9 2.39 39.79 42.18 NOTE
r-patched-solaris-sparc 0.9 726.70 NOTE
r-patched-solaris-x86 0.9 150.40 NOTE
r-release-linux-x86_64 0.9 2.42 39.65 42.08 NOTE
r-release-osx-x86_64-mavericks 0.9 NOTE
r-release-windows-ix86+x86_64 0.9 10.00 64.00 74.00 NOTE
r-oldrel-windows-ix86+x86_64 0.9 8.00 68.00 76.00 NOTE

Check Details

Version: 0.9
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘ARTP’ ‘snowfall’ ‘survival’ ‘xtable’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9
Check: R code for possible problems
Result: NOTE
    ARTP.GE: no visible global function definition for ‘read.table’
    ARTP.GE: no visible global function definition for ‘write.table’
    ARTP.GE: no visible global function definition for ‘ARTP_pathway’
    LR.cont: no visible global function definition for ‘glm’
    LR.cont: no visible global function definition for ‘update’
    LR.cont: no visible global function definition for ‘binomial’
    LR.cont.surv: no visible global function definition for ‘coxph’
    LR.cont.surv: no visible global function definition for ‘update’
    LR.inter.cat: no visible global function definition for ‘glm’
    LR.inter.cat: no visible global function definition for ‘update’
    LR.inter.cat: no visible global function definition for ‘binomial’
    LR.inter.cat: no visible global function definition for ‘pchisq’
    LR.inter.cat: no visible global function definition for ‘anova’
    LR.inter.cat.surv: no visible global function definition for ‘coxph’
    LR.inter.cat.surv: no visible global function definition for ‘update’
    LR.inter.cat.surv: no visible global function definition for ‘anova’
    LR.inter.cont: no visible global function definition for ‘glm’
    LR.inter.cont: no visible global function definition for ‘update’
    LR.inter.cont: no visible global function definition for ‘binomial’
    LR.inter.cont.surv: no visible global function definition for ‘coxph’
    LR.inter.cont.surv: no visible global function definition for ‘update’
    compute.p.snp.obs: no visible global function definition for
     ‘write.table’
    data.to.list.gene.snp: no visible global function definition for
     ‘read.table’
    permutation.snp: no visible global function definition for ‘sfInit’
    permutation.snp: no visible global function definition for ‘sfLibrary’
    permutation.snp: no visible global function definition for
     ‘sfExportAll’
    permutation.snp: no visible global function definition for ‘sfLapply’
    permutation.snp: no visible global function definition for ‘sfStop’
    permutation.snp: no visible global function definition for
     ‘write.table’
    permutation.wrapper.cat.inter: no visible global function definition
     for ‘update’
    permutation.wrapper.cont: no visible global function definition for
     ‘update’
    permutation.wrapper.cont.inter: no visible global function definition
     for ‘update’
    Undefined global functions or variables:
     ARTP_pathway anova binomial coxph glm pchisq read.table sfExportAll
     sfInit sfLapply sfLibrary sfStop update write.table
    Consider adding
     importFrom("stats", "anova", "binomial", "glm", "pchisq", "update")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.9
Flags: --no-stop-on-test-error
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 0.9
Flags: --no-stop-on-test-error
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘ARTP’ ‘snowfall’ ‘survival’ ‘xtable’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 0.9
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    ARTP.GE: no visible global function definition for ‘read.table’
    ARTP.GE: no visible global function definition for ‘write.table’
    ARTP.GE: no visible global function definition for ‘ARTP_pathway’
    LR.cont: no visible global function definition for ‘glm’
    LR.cont: no visible global function definition for ‘update’
    LR.cont: no visible global function definition for ‘binomial’
    LR.cont.surv: no visible global function definition for ‘coxph’
    LR.cont.surv: no visible global function definition for ‘update’
    LR.inter.cat: no visible global function definition for ‘glm’
    LR.inter.cat: no visible global function definition for ‘update’
    LR.inter.cat: no visible global function definition for ‘binomial’
    LR.inter.cat: no visible global function definition for ‘pchisq’
    LR.inter.cat: no visible global function definition for ‘anova’
    LR.inter.cat.surv: no visible global function definition for ‘coxph’
    LR.inter.cat.surv: no visible global function definition for ‘update’
    LR.inter.cat.surv: no visible global function definition for ‘anova’
    LR.inter.cont: no visible global function definition for ‘glm’
    LR.inter.cont: no visible global function definition for ‘update’
    LR.inter.cont: no visible global function definition for ‘binomial’
    LR.inter.cont.surv: no visible global function definition for ‘coxph’
    LR.inter.cont.surv: no visible global function definition for ‘update’
    compute.p.snp.obs: no visible global function definition for
     ‘write.table’
    data.to.list.gene.snp: no visible global function definition for
     ‘read.table’
    permutation.snp: no visible global function definition for ‘sfInit’
    permutation.snp: no visible global function definition for ‘sfLibrary’
    permutation.snp: no visible global function definition for
     ‘sfExportAll’
    permutation.snp: no visible global function definition for ‘sfLapply’
    permutation.snp: no visible global function definition for ‘sfStop’
    permutation.snp: no visible global function definition for
     ‘write.table’
    permutation.wrapper.cat.inter: no visible global function definition
     for ‘update’
    permutation.wrapper.cont: no visible global function definition for
     ‘update’
    permutation.wrapper.cont.inter: no visible global function definition
     for ‘update’
    Undefined global functions or variables:
     ARTP_pathway anova binomial coxph glm pchisq read.table sfExportAll
     sfInit sfLapply sfLibrary sfStop update write.table
    Consider adding
     importFrom("stats", "anova", "binomial", "glm", "pchisq", "update")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 0.9
Check: R code for possible problems
Result: NOTE
    ARTP.GE: no visible global function definition for 'ARTP_pathway'
    LR.cont.surv: no visible global function definition for 'coxph'
    LR.inter.cat.surv: no visible global function definition for 'coxph'
    LR.inter.cont.surv: no visible global function definition for 'coxph'
    permutation.snp: no visible global function definition for 'sfInit'
    permutation.snp: no visible global function definition for 'sfLibrary'
    permutation.snp: no visible global function definition for
     'sfExportAll'
    permutation.snp: no visible global function definition for 'sfLapply'
    permutation.snp: no visible global function definition for 'sfStop'
Flavor: r-oldrel-windows-ix86+x86_64