CRAN Package Check Results for Package lme4

Last updated on 2016-12-28 23:47:19.

Memtest notes: clang-UBSAN clang-UBSAN gcc6-UBSAN gcc6-UBSAN gcc7-UBSAN gcc7-UBSAN

Check Details

Version: 1.1-12
Check: files in ‘vignettes’
Result: WARN
    Files in the 'vignettes' directory newer than all files in 'inst/doc':
     ‘lmer.R’, ‘lmer.Rnw’
    Files in the 'vignettes' directory newer than same file in 'inst/doc':
     ‘PLSvGLS.Rnw’, ‘Theory.Rnw’, ‘lmerperf.Rmd’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64

Version: 1.1-12
Flags: --no-stop-on-test-error
Check: installed package size
Result: NOTE
     installed size is 24.0Mb
     sub-directories of 1Mb or more:
     doc 1.8Mb
     libs 18.7Mb
     testdata 1.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.1-12
Flags: --no-stop-on-test-error
Check: files in ‘vignettes’
Result: WARN
    Files in the 'vignettes' directory newer than all files in 'inst/doc':
     ‘lmer.R’, ‘lmer.Rnw’
    Files in the 'vignettes' directory newer than same file in 'inst/doc':
     ‘PLSvGLS.Rnw’, ‘Theory.Rnw’, ‘lmerperf.Rmd’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.1-12
Check: installed package size
Result: NOTE
     installed size is 7.3Mb
     sub-directories of 1Mb or more:
     doc 1.8Mb
     libs 2.1Mb
     testdata 1.5Mb
Flavors: r-devel-windows-ix86+x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1-12
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'AAAtest-all.R' [117s]
     Running 'HSAURtrees.R' [3s]
     Running 'REMLdev.R' [3s]
     Running 'ST.R' [2s]
     Running 'agridat_gotway.R' [5s]
    Running the tests in 'tests/agridat_gotway.R' failed.
    Last 13 lines of output:
     [1] 287.369138 741.680806 12.677227 8.345542 69.442034
     [6] 40.398259 0.703201 134.231874 77.377945 12182.630252
     [11] 77.000297 237.128460 16.983415 55.160677 193.336267
     [16] 46.562474 30.012926
     > ## bobyqa gets gradients *at least* 1.64* lower
     >
     > lme4fit <- list(fixef=fixef(m1),theta=getME(m1,"theta"))
     >
     > ## hack around slight naming differences
     > lme4fit$theta <- unname(lme4fit$theta)
     > lme4.0fit$theta <- unname(lme4.0fit$theta)
     > stopifnot(all.equal(lme4fit, lme4.0fit, tolerance = 3e-4))
     Error: lme4fit and lme4.0fit are not equal:
     Component "theta": Mean relative difference: 0.000469576
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.1-12
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
     input string 785 is invalid in this locale
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'lmer.tex' failed.
    LaTeX errors:
    ! Undefined control sequence.
    l.15 x<9c><ed>\Mh
     ^^TK^^P<ae><97>(q$<ee>؈!.L6^^L/($oYX^^Hx^^H<eb>!<a0>'o<de><<eb>ٓ^^A/<a2>O<f0>]ċ^^G<f5>^^]<84><e7>A...
    The control sequence at the end of the top line
    of your error message was never \def'ed. If you have
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Missing $ inserted.
    <inserted text>
     $
    l.16 ...F<a0><ba>v<ed>Zggg<ad>V{<fd><fa>5^^Q9<8e>388866<a6><94><8a><e3>^^X<fd>^^]<c7><c1><83><ae>^
     <bd><9a>J<a5>l<db>v^^\^^G<9f>J<a9><87>^^O^^_<c6>q|...
    ! Extra }, or forgotten $.
    l.17 Ԓ<da>[}
     <b8>ӄ<f6><a0><9c>0^^L<89>(<9b><cd><e2>^^A<98><ce>0^^L<0b><85>^^BOm<b9>\^^^^^Z^^Z<8a><a2><88><a7>?<9b><cd>"@a<ce>0<8e>eYP{<a1>P<c0>O<<c8><e3>...
    I've deleted a group-closing
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-mavericks