CRAN Package Check Results for Package onemap

Last updated on 2016-12-28 23:47:25.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0-4 3.00 43.48 46.48 NOTE
r-devel-linux-x86_64-debian-gcc 2.0-4 4.58 42.49 47.06 NOTE
r-devel-linux-x86_64-fedora-clang 2.0-4 76.32 NOTE --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 2.0-4 89.67 NOTE --no-stop-on-test-error
r-devel-macos-x86_64-clang 2.0-4 56.74 NOTE --no-stop-on-test-error
r-devel-windows-ix86+x86_64 2.0-4 28.00 104.00 132.00 NOTE
r-patched-linux-x86_64 2.0-4 9.42 42.61 52.03 NOTE
r-patched-solaris-sparc 2.0-4 409.40 NOTE
r-patched-solaris-x86 2.0-4 91.90 NOTE
r-release-linux-x86_64 2.0-4 9.38 42.35 51.73 NOTE
r-release-osx-x86_64-mavericks 2.0-4 WARN
r-release-windows-ix86+x86_64 2.0-4 30.00 74.00 104.00 NOTE
r-oldrel-windows-ix86+x86_64 2.0-4 17.00 99.00 116.00 OK

Check Details

Version: 2.0-4
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     print.bc.onemap print.compare print.f2.onemap print.group print.order
     print.outcross print.rf.2pts print.rf.3pts print.riself.onemap
     print.risib.onemap print.sequence print.try
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 2.0-4
Check: R code for possible problems
Result: NOTE
    avoid.reverse: no visible global function definition for ‘cor.test’
    compare: no visible global function definition for ‘flush.console’
    compare: no visible global function definition for ‘txtProgressBar’
    compare: no visible global function definition for ‘setTxtProgressBar’
    draw.map: no visible global function definition for ‘plot’
    draw.map: no visible global function definition for ‘points’
    draw.map: no visible global function definition for ‘axis’
    draw.map: no visible global function definition for ‘abline’
    draw.map: no visible global function definition for ‘text’
    draw.map: no visible binding for global variable ‘dist’
    draw.map: no visible global function definition for ‘lines’
    draw.order: no visible global function definition for ‘layout’
    draw.order: no visible global function definition for ‘par’
    draw.order: no visible global function definition for ‘plot’
    draw.order: no visible global function definition for ‘text’
    draw.order: no visible global function definition for ‘axis’
    draw.order: no visible global function definition for ‘title’
    draw.rf.inter : plotFunction: no visible global function definition for
     ‘par’
    draw.rf.inter : plotFunction: no visible global function definition for
     ‘image’
    draw.rf.inter : plotFunction: no visible global function definition for
     ‘rainbow’
    draw.rf.inter : plotFunction: no visible global function definition for
     ‘title’
    draw.rf.inter : plotFunction: no visible global function definition for
     ‘text’
    draw.try: no visible global function definition for ‘layout’
    draw.try: no visible global function definition for ‘par’
    draw.try: no visible global function definition for ‘plot’
    draw.try: no visible global function definition for ‘abline’
    draw.try: no visible global function definition for ‘text’
    draw.try: no visible global function definition for ‘axis’
    draw.try: no visible global function definition for ‘points’
    draw.try: no visible global function definition for ‘title’
    group: no visible global function definition for ‘tail’
    make.seq: no visible global function definition for ‘head’
    plotFunction.out: no visible global function definition for ‘par’
    plotFunction.out: no visible global function definition for ‘image’
    plotFunction.out: no visible global function definition for ‘rainbow’
    plotFunction.out: no visible global function definition for ‘title’
    plotFunction.out: no visible global function definition for ‘text’
    print.compare: no visible global function definition for ‘head’
    rf.2pts: no visible global function definition for ‘txtProgressBar’
    rf.2pts: no visible global function definition for ‘setTxtProgressBar’
    ripple.seq: no visible global function definition for ‘flush.console’
    ripple.seq: no visible global function definition for ‘head’
    ripple.seq : <anonymous>: no visible global function definition for
     ‘tail’
    ripple.seq: no visible global function definition for ‘tail’
    ripple.seq : <anonymous>: no visible global function definition for
     ‘head’
    try.seq: no visible global function definition for ‘flush.console’
    Undefined global functions or variables:
     abline axis cor.test dist flush.console head image layout lines par
     plot points rainbow setTxtProgressBar tail text title txtProgressBar
    Consider adding
     importFrom("grDevices", "rainbow")
     importFrom("graphics", "abline", "axis", "image", "layout", "lines",
     "par", "plot", "points", "text", "title")
     importFrom("stats", "cor.test", "dist")
     importFrom("utils", "flush.console", "head", "setTxtProgressBar",
     "tail", "txtProgressBar")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 2.0-4
Flags: --no-stop-on-test-error
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     print.bc.onemap print.compare print.f2.onemap print.group print.order
     print.outcross print.rf.2pts print.rf.3pts print.riself.onemap
     print.risib.onemap print.sequence print.try
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 2.0-4
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    avoid.reverse: no visible global function definition for ‘cor.test’
    compare: no visible global function definition for ‘flush.console’
    compare: no visible global function definition for ‘txtProgressBar’
    compare: no visible global function definition for ‘setTxtProgressBar’
    draw.map: no visible global function definition for ‘plot’
    draw.map: no visible global function definition for ‘points’
    draw.map: no visible global function definition for ‘axis’
    draw.map: no visible global function definition for ‘abline’
    draw.map: no visible global function definition for ‘text’
    draw.map: no visible binding for global variable ‘dist’
    draw.map: no visible global function definition for ‘lines’
    draw.order: no visible global function definition for ‘layout’
    draw.order: no visible global function definition for ‘par’
    draw.order: no visible global function definition for ‘plot’
    draw.order: no visible global function definition for ‘text’
    draw.order: no visible global function definition for ‘axis’
    draw.order: no visible global function definition for ‘title’
    draw.rf.inter : plotFunction: no visible global function definition for
     ‘par’
    draw.rf.inter : plotFunction: no visible global function definition for
     ‘image’
    draw.rf.inter : plotFunction: no visible global function definition for
     ‘rainbow’
    draw.rf.inter : plotFunction: no visible global function definition for
     ‘title’
    draw.rf.inter : plotFunction: no visible global function definition for
     ‘text’
    draw.try: no visible global function definition for ‘layout’
    draw.try: no visible global function definition for ‘par’
    draw.try: no visible global function definition for ‘plot’
    draw.try: no visible global function definition for ‘abline’
    draw.try: no visible global function definition for ‘text’
    draw.try: no visible global function definition for ‘axis’
    draw.try: no visible global function definition for ‘points’
    draw.try: no visible global function definition for ‘title’
    group: no visible global function definition for ‘tail’
    make.seq: no visible global function definition for ‘head’
    plotFunction.out: no visible global function definition for ‘par’
    plotFunction.out: no visible global function definition for ‘image’
    plotFunction.out: no visible global function definition for ‘rainbow’
    plotFunction.out: no visible global function definition for ‘title’
    plotFunction.out: no visible global function definition for ‘text’
    print.compare: no visible global function definition for ‘head’
    rf.2pts: no visible global function definition for ‘txtProgressBar’
    rf.2pts: no visible global function definition for ‘setTxtProgressBar’
    ripple.seq: no visible global function definition for ‘flush.console’
    ripple.seq: no visible global function definition for ‘head’
    ripple.seq : <anonymous>: no visible global function definition for
     ‘tail’
    ripple.seq: no visible global function definition for ‘tail’
    ripple.seq : <anonymous>: no visible global function definition for
     ‘head’
    try.seq: no visible global function definition for ‘flush.console’
    Undefined global functions or variables:
     abline axis cor.test dist flush.console head image layout lines par
     plot points rainbow setTxtProgressBar tail text title txtProgressBar
    Consider adding
     importFrom("grDevices", "rainbow")
     importFrom("graphics", "abline", "axis", "image", "layout", "lines",
     "par", "plot", "points", "text", "title")
     importFrom("stats", "cor.test", "dist")
     importFrom("utils", "flush.console", "head", "setTxtProgressBar",
     "tail", "txtProgressBar")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 2.0-4
Check: dependencies in R code
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
Flavor: r-release-osx-x86_64-mavericks

Version: 2.0-4
Check: S3 generic/method consistency
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 2.0-4
Check: replacement functions
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    The argument of a replacement function which corresponds to the right
    hand side must be named ‘value’.
Flavor: r-release-osx-x86_64-mavericks

Version: 2.0-4
Check: foreign function calls
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 2.0-4
Check: R code for possible problems
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 keyavoid.reverse: no visible global function definition for ‘cor.test’
    compare: no visible global function definition for ‘flush.console’
    compare: no visible global function definition for ‘txtProgressBar’
    compare: no visible global function definition for ‘setTxtProgressBar’
    draw.map: no visible global function definition for ‘plot’
    draw.map: no visible global function definition for ‘points’
    draw.map: no visible global function definition for ‘axis’
    draw.map: no visible global function definition for ‘abline’
    draw.map: no visible global function definition for ‘text’
    draw.map: no visible binding for global variable ‘dist’
    draw.map: no visible global function definition for ‘lines’
    draw.order: no visible global function definition for ‘layout’
    draw.order: no visible global function definition for ‘par’
    draw.order: no visible global function definition for ‘plot’
    draw.order: no visible global function definition for ‘text’
    draw.order: no visible global function definition for ‘axis’
    draw.order: no visible global function definition for ‘title’
    draw.rf.inter : plotFunction: no visible global function definition for
     ‘par’
    draw.rf.inter : plotFunction: no visible global function definition for
     ‘image’
    draw.rf.inter : plotFunction: no visible global function definition for
     ‘rainbow’
    draw.rf.inter : plotFunction: no visible global function definition for
     ‘title’
    draw.rf.inter : plotFunction: no visible global function definition for
     ‘text’
    draw.try: no visible global function definition for ‘layout’
    draw.try: no visible global function definition for ‘par’
    draw.try: no visible global function definition for ‘plot’
    draw.try: no visible global function definition for ‘abline’
    draw.try: no visible global function definition for ‘text’
    draw.try: no visible global function definition for ‘axis’
    draw.try: no visible global function definition for ‘points’
    draw.try: no visible global function definition for ‘title’
    group: no visible global function definition for ‘tail’
    make.seq: no visible global function definition for ‘head’
    plotFunction.out: no visible global function definition for ‘par’
    plotFunction.out: no visible global function definition for ‘image’
    plotFunction.out: no visible global function definition for ‘rainbow’
    plotFunction.out: no visible global function definition for ‘title’
    plotFunction.out: no visible global function definition for ‘text’
    print.compare: no visible global function definition for ‘head’
    rf.2pts: no visible global function definition for ‘txtProgressBar’
    rf.2pts: no visible global function definition for ‘setTxtProgressBar’
    ripple.seq: no visible global function definition for ‘flush.console’
    ripple.seq: no visible global function definition for ‘head’
    ripple.seq : <anonymous>: no visible global function definition for
     ‘tail’
    ripple.seq: no visible global function definition for ‘tail’
    ripple.seq : <anonymous>: no visible global function definition for
     ‘head’
    try.seq: no visible global function definition for ‘flush.console’
    Undefined global functions or variables:
     abline axis cor.test dist flush.console head image layout lines par
     plot points rainbow setTxtProgressBar tail text title txtProgressBar
    Consider adding
     importFrom("grDevices", "rainbow")
     importFrom("graphics", "abline", "axis", "image", "layout", "lines",
     "par", "plot", "points", "text", "title")
     importFrom("stats", "cor.test", "dist")
     importFrom("utils", "flush.console", "head", "setTxtProgressBar",
     "tail", "txtProgressBar")
    to your NAMESPACE file.
Flavor: r-release-osx-x86_64-mavericks

Version: 2.0-4
Check: for missing documentation entries
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    All user-level objects in a package should have documentation entries.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 2.0-4
Check: for code/documentation mismatches
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
Flavor: r-release-osx-x86_64-mavericks

Version: 2.0-4
Check: Rd \usage sections
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks