CRAN Package Check Results for Package poppr

Last updated on 2016-12-28 23:47:28.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.3.0 8.66 146.27 154.93 OK
r-devel-linux-x86_64-debian-gcc 2.3.0 9.11 145.43 154.53 OK
r-devel-linux-x86_64-fedora-clang 2.3.0 327.17 OK --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 2.3.0 313.65 ERROR --no-stop-on-test-error
r-devel-macos-x86_64-clang 2.3.0 245.83 OK --no-stop-on-test-error
r-devel-windows-ix86+x86_64 2.3.0 36.00 328.00 364.00 OK
r-patched-linux-x86_64 2.3.0 8.03 124.10 132.13 OK
r-patched-solaris-sparc 2.3.0 1472.30 ERROR
r-patched-solaris-x86 2.3.0 336.60 OK
r-release-linux-x86_64 2.3.0 8.53 124.24 132.77 OK
r-release-osx-x86_64-mavericks 2.3.0 OK
r-release-windows-ix86+x86_64 2.3.0 43.00 254.00 297.00 OK
r-oldrel-windows-ix86+x86_64 2.3.0 30.00 263.00 293.00 OK

Memtest notes: valgrind

Check Details

Version: 2.3.0
Flags: --no-stop-on-test-error
Check: tests
Result: ERROR
     Running ‘test-all.R’ [17s/20s]
    Running the tests in ‘tests/test-all.R’ failed.
    Last 13 lines of output:
     This is poppr version 2.3.0. To get started, type package?poppr
     OMP parallel support: available
     Error in if (maxx > 1) x <- x/maxx :
     missing value where TRUE/FALSE needed
     Calls: test_check ... update_edge_scales -> gray -> adjustcurve -> rerange
     In addition: Warning messages:
     1: In mlg.filter.internal(pop, threshold, missing, memory, algorithm, :
     The data resulted in a negative or invalid distance or cluster id. Result vector is incomplete.
     2: In min(x, na.rm = TRUE) :
     no non-missing arguments to min; returning Inf
     3: In max(x, na.rm = TRUE) :
     no non-missing arguments to max; returning -Inf
     testthat results ================================================================
     OK: 138 SKIPPED: 47 FAILED: 0
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 2.3.0
Check: examples
Result: ERROR
    Running examples in ‘poppr-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: bitwise.dist
    > ### Title: Calculate a dissimilarity distance matrix for SNP data.
    > ### Aliases: bitwise.dist
    >
    > ### ** Examples
    >
    > set.seed(999)
    > x <- glSim(n.ind = 10, n.snp.nonstruc = 5e2, n.snp.struc = 5e2, ploidy = 2)
    
     *** caught segfault ***
    address 7400000, cause 'memory not mapped'
Flavor: r-patched-solaris-sparc

Version: 2.3.0
Check: tests
Result: ERROR
     Running ‘test-all.R’ [37s/46s]
    Running the tests in ‘tests/test-all.R’ failed.
    Last 13 lines of output:
    
     /// adegenet 2.0.1 is loaded ////////////
    
     > overview: '?adegenet'
     > tutorials/doc/questions: 'adegenetWeb()'
     > bug reports/feature requests: adegenetIssues()
    
    
     This is poppr version 2.3.0. To get started, type package?poppr
     OMP parallel support: available
    
     *** caught segfault ***
     address 7000000, cause 'memory not mapped'
Flavor: r-patched-solaris-sparc