Preprocess and analysis of genomic data. MPAgenomics provides wrappers from commonly used packages to streamline their repeated manipulation, offering an easy-to-use pipeline. The segmentation of successive multiple profiles is performed with an automatic choice of parameters involved in the wrapped packages. Considering multiple profiles in the same time, MPAgenomics wraps efficient penalized regression methods to select relevant markers associated with a given outcome.
| Version: | 1.1.2 |
| Imports: | R.utils, changepoint (≥ 1.1), glmnet, cghseg, HDPenReg (≥ 0.90), spikeslab |
| Suggests: | CGHcall, aroma.affymetrix, aroma.cn, aroma.core, aroma.light, snowfall, R.devices, R.filesets, R.methodsS3, R.oo, matrixStats |
| Published: | 2014-11-05 |
| Author: | Quentin Grimonprez with contributions from Guillemette Marot and Samuel Blanck. Some functions use code created by Sjoerd Vosse, Mark van de Wiel, Pierre Neuvial, Henrik Bengtsson. |
| Maintainer: | Samuel Blanck <samuel.blanck at inria.fr> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| Copyright: | Inria 2012-2014. |
| NeedsCompilation: | no |
| Citation: | MPAgenomics citation info |
| Materials: | NEWS |
| CRAN checks: | MPAgenomics results |
| Reference manual: | MPAgenomics.pdf |
| Vignettes: |
Using MPAgenomics |
| Package source: | MPAgenomics_1.1.2.tar.gz |
| Windows binaries: | r-devel: MPAgenomics_1.1.2.zip, r-release: MPAgenomics_1.1.2.zip, r-oldrel: MPAgenomics_1.1.2.zip |
| OS X Mavericks binaries: | r-release: MPAgenomics_1.1.2.tgz, r-oldrel: MPAgenomics_1.1.2.tgz |
| Old sources: | MPAgenomics archive |
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