Takes a phylogenetic tree (of class phylo) and a data frame (or matrix) of corresponding tip labels and p-values, and determines the significance of the branches (families of p-values) and plots the tree with colored branches (corresponding to families) according to their levels of significance. Also produces a CSV file with the p-values of all of the branches as well as which tips belong to which branches. Finally, it exports a file that can be opened in FigTree that produces a colored plot (colored branches according to their significance of corresponding groups of p-values) with p-value annotations.
| Version: | 1.10.3 |
| Imports: | ape, phylobase, phyext2, RColorBrewer, phyloseq, graphics, utils, stats |
| Published: | 2016-02-06 |
| Author: | John R. Stevens and Todd R. Jones |
| Maintainer: | John R. Stevens <john.r.stevens at usu.edu> |
| License: | GPL-3 |
| NeedsCompilation: | yes |
| Citation: | SigTree citation info |
| Materials: | NEWS |
| In views: | Phylogenetics |
| CRAN checks: | SigTree results |
| Reference manual: | SigTree.pdf |
| Vignettes: |
SigTree Tutorial Vignette |
| Package source: | SigTree_1.10.3.tar.gz |
| Windows binaries: | r-devel: SigTree_1.10.3.zip, r-release: SigTree_1.10.3.zip, r-oldrel: SigTree_1.10.3.zip |
| OS X Mavericks binaries: | r-release: SigTree_1.10.3.tgz, r-oldrel: not available |
| Old sources: | SigTree archive |
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