An interface to explore, analyze, and visualize droplet digital PCR (ddPCR) data in R. This is the first non-proprietary software for analyzing two-channel ddPCR data. An interactive tool was also created and is available online to facilitate this analysis for anyone who is not comfortable with using R.
| Version: | 1.6 |
| Depends: | R (≥ 3.1.0) |
| Imports: | DT (≥ 0.2), dplyr (≥ 0.5.0), ggplot2 (≥ 2.2.0), lazyeval (≥ 0.1.10), magrittr (≥ 1.5), mixtools (≥ 1.0.2), plyr (≥ 1.8.1), readr (≥ 0.1.0), shiny (≥ 0.11.0), shinyjs (≥ 0.4.0) |
| Suggests: | ggExtra (≥ 0.3.0), graphics, grid (≥ 3.2.2), gridExtra (≥ 2.0.0), knitr (≥ 1.7), rmarkdown, stats, testthat (≥ 0.11.0), utils |
| Published: | 2016-11-12 |
| Author: | Dean Attali [aut, cre] |
| Maintainer: | Dean Attali <daattali at gmail.com> |
| BugReports: | https://github.com/daattali/ddpcr/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/daattali/ddpcr |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | ddpcr results |
| Reference manual: | ddpcr.pdf |
| Vignettes: |
Algorithms in ddpcr analysis Extending ddpcr by adding new plate types Package ddpcr Implementation technical details |
| Package source: | ddpcr_1.6.tar.gz |
| Windows binaries: | r-devel: ddpcr_1.6.zip, r-release: ddpcr_1.6.zip, r-oldrel: ddpcr_1.6.zip |
| OS X Mavericks binaries: | r-release: ddpcr_1.6.tgz, r-oldrel: ddpcr_1.6.tgz |
| Old sources: | ddpcr archive |
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