phyloTop v2.0.0

phyloTop v1.1.1 was archived on CRAN on 2015-10-29 as it was no longer maintained by its creator, Michael Boyd.

The package has been revived by Michelle Kendall and Caroline Colijn. All of the functions in version 2.0.0 have been updated, with faster implementations, simplified format requirements and dependencies, and further help files and examples added. We have included explanations in the help files wherever version 2.0.0 is not backwards compatible, and documented the deprecated functions.

Major updates include: