Gene banks increasingly use molecular markers for routine characterization of plant collections and farmer managed diversity. The gene bank of the International Potato Center presently uses a micro-satellite marker kit to produce molecular profiles for potato accessions. We have been searching for a compact graphical representation that shows both molecular diversity and accession characteristics - thus permitting biologists and collection curators to have a simple way to interpret molecular data. Inspired by the ancient Andean data recording system we devised a graph that allows for standardized representation while leaving room for updates of the marker kit and the collection of accessions. The graph has been used in several catalogs of potatoes.
| Version: | 1.9.0 |
| Depends: | R (≥ 3.0.0), stats, agricolae, stringr, pixmap, shiny, xtable |
| Suggests: | knitr |
| Published: | 2014-04-22 |
| Author: | Reinhard Simon, Pablo Carhuapoma, Vilma Hualla, Stef de Haan, Marc Ghislain, Jorge Nunez, Rene Gomez, Felipe de Mendiburu, William Roca, Merideth Bonierbale |
| Maintainer: | Reinhard Simon <R.SIMON at CGIAR.ORG> |
| License: | GPL-2 |
| Copyright: | International Potato Center |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | quipu results |
| Reference manual: | quipu.pdf |
| Vignettes: |
Quipu tutorial |
| Package source: | quipu_1.9.0.tar.gz |
| Windows binaries: | r-devel: quipu_1.9.0.zip, r-release: quipu_1.9.0.zip, r-oldrel: quipu_1.9.0.zip |
| OS X Mavericks binaries: | r-release: quipu_1.9.0.tgz, r-oldrel: quipu_1.9.0.tgz |
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