CRAN Package Check Results for Package AFM

Last updated on 2017-02-24 23:52:14.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.2 4.12 61.74 65.86 OK
r-devel-linux-x86_64-debian-gcc 1.2.2 4.23 61.99 66.22 OK
r-devel-linux-x86_64-fedora-clang 1.2.2 123.88 OK --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 1.2.2 153.45 OK --no-stop-on-test-error
r-devel-macos-x86_64-clang 1.2.2 94.07 OK --no-stop-on-test-error
r-devel-windows-ix86+x86_64 1.2.2 20.00 132.00 152.00 OK
r-patched-linux-x86_64 1.2.2 4.60 56.80 61.40 OK
r-patched-solaris-sparc 1.2.2 672.90 OK
r-patched-solaris-x86 1.2.2 141.40 OK
r-release-linux-x86_64 1.2.2 3.94 57.64 61.59 OK
r-release-osx-x86_64-mavericks 1.2.2 ERROR
r-release-windows-ix86+x86_64 1.2.2 19.00 103.00 122.00 OK
r-oldrel-windows-ix86+x86_64 1.2.2 25.00 130.00 155.00 OK

Check Details

Version: 1.2.2
Check: examples
Result: ERROR
    Running examples in ‘AFM-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: evaluateVariogramModels
    > ### Title: evaluateVariogramModels method to evaluate the basic variogram
    > ### models
    > ### Aliases: evaluateVariogramModels
    > ### evaluateVariogramModels,AFMImageVariogramAnalysis-method
    >
    > ### ** Examples
    >
    > library(AFM)
    >
    > data("AFMImageOfRegularPeaks")
    > # take an extract of the image to fasten the calculation
    > AFMImage<-extractAFMImage(AFMImageOfRegularPeaks, 40, 40, 32)
    [1] "40 40 31 40 71 40 71"
    > # e.g. AFMImage@fullfilename<-"/users/ubuntu/AFMImageOfRegularPeaks-extract.txt"
    > AFMImage@fullfilename<-paste(tempdir(), "AFMImageOfRegularPeaks-extract.txt", sep="/")
    >
    > AFMImageAnalyser<-AFMImageAnalyser(AFMImage)
    Warning in data.table(lib = c("AFM", "gstat", "fractaldim", "fftwtools"), :
     Item 1 is of size 4 but maximum size is 5 (recycled leaving remainder of 1 items)
    >
    > # Variogram analysis
    > sampleFitPercentage<-3.43/100
    > variogramAnalysis<-AFMImageVariogramAnalysis(sampleFitPercentage)
    > variogramAnalysis@omnidirectionalVariogram<-
    + AFM::calculateOmnidirectionalVariogram(AFMImage=AFMImage,
    + AFMImageVariogramAnalysis=variogramAnalysis)
    [1] "using automatic width of 1"
    [1] "calculating omnidirectional variogram using width of 1 ..."
    Error in CRS("+init") : no colon in init= string
    Calls: <Anonymous> -> CRS
    Execution halted
Flavor: r-release-osx-x86_64-mavericks