We propose a generalized linear regression with higher-order interaction terms to assess the influences of genomic features such as DNA-binding proteins and functional elements on long-range contacts from Hi-C experiments.
| Version: | 1.0 |
| Depends: | R (≥ 3.3.0) |
| Imports: | IRanges, GenomeInfoDb, methods, GenomicRanges, Matrix, glmnet, rtracklayer, HiTC, MASS, S4Vectors |
| Published: | 2016-10-17 |
| Author: | Raphael Mourad |
| Maintainer: | Raphael Mourad <raphael.mourad at ibcg.biotoul.fr> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| CRAN checks: | HiCglmi results |
| Reference manual: | HiCglmi.pdf |
| Package source: | HiCglmi_1.0.tar.gz |
| Windows binaries: | r-devel: HiCglmi_1.0.zip, r-release: HiCglmi_1.0.zip, r-oldrel: not available |
| OS X Mavericks binaries: | r-release: HiCglmi_1.0.tgz, r-oldrel: not available |
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