RbioRXN: Process Rhea, KEGG, MetaCyc, Unipathway Biochemical Reaction Data

To facilitate retrieving and processing biochemical reaction data such as Rhea, MetaCyc, KEGG and Unipathway, the package provides the functions to download and parse data, instantiate generic reaction and check mass-balance. The package aims to construct an integrated metabolic network and genome-scale metabolic model.

Version: 1.5.1
Depends: R (≥ 3.0.3), fmcsR, ChemmineR
Imports: plyr, RCurl, gdata, KEGGREST, data.table, stringr
Published: 2015-05-19
Author: Byoungnam Min, Byeonghyeok Park, Kyoung Heon Kim and In-Geol Choi
Maintainer: Byoungnam Min <mbnmbn00 at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: RbioRXN results


Reference manual: RbioRXN.pdf
Package source: RbioRXN_1.5.1.tar.gz
Windows binaries: r-devel: RbioRXN_1.5.1.zip, r-release: RbioRXN_1.5.1.zip, r-oldrel: RbioRXN_1.5.1.zip
OS X Mavericks binaries: r-release: RbioRXN_1.5.1.tgz, r-oldrel: not available
Old sources: RbioRXN archive


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