Pipeline to read and analyze raw SNP array data. The data is preprocessed and normalized. Genotypes and CNVs are called. Synteny blocks are calculated and translocations detected. The results can be plotted with special functions.
| Version: | 1.1 |
| Imports: | illuminaio, limma, preprocessCore, R6, utils, grDevices, graphics, dbscan, Ckmeans.1d.dp, DNAcopy, openxlsx |
| Suggests: | testthat, knitr, rmarkdown, brassicaData, mixtools, devtools, KernSmooth |
| Published: | 2016-10-17 |
| Author: | Fabian Grandke [cre, aut], Birgit Samans [aut] |
| Maintainer: | Fabian Grandke <grafabian at gmail.com> |
| BugReports: | http://github.com/grafab/gsrc/issues |
| License: | GPL-3 |
| URL: | http://github.com/grafab/gsrc |
| NeedsCompilation: | no |
| Citation: | gsrc citation info |
| Materials: | NEWS |
| CRAN checks: | gsrc results |
| Reference manual: | gsrc.pdf |
| Vignettes: |
Introduction Synteny Block Calculation |
| Package source: | gsrc_1.1.tar.gz |
| Windows binaries: | r-devel: gsrc_1.1.zip, r-release: gsrc_1.1.zip, r-oldrel: gsrc_1.1.zip |
| OS X Mavericks binaries: | r-release: gsrc_1.1.tgz, r-oldrel: gsrc_1.1.tgz |
| Old sources: | gsrc archive |
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