haploR: utilities for querying HaploReg and other similar web-based tools

Installation

Development version

The last version of haploR that is compatible with the current version of R (3.3), which can be downloaded using devtools:

devtools::install_github("izhbannikov/haploR", buildVignette=TRUE)

Usage

Querying HaploReg

library(haploR)
data <- queryHaploreg("rs10048158")
head(data)

For a particular study

library(haploR)
studies <- getStudyList()
studies[[2]]
queryHaploreg(study=studies[[2]])

Querying RegulomeDB

library(haploR)
data <- queryRegulome(c("rs4791078","rs10048158"))
head(data)