Create interactive Q-Q, manhattan and volcano plots that are usable from the R console, in the 'RStudio' viewer pane, in 'R Markdown' documents, and in 'Shiny' apps. Hover the mouse pointer over a point to show details or drag a rectangle to zoom. A manhattan plot is a popular graphical method for visualizing results from high-dimensional data analysis such as a (epi)genome wide association study (GWAS or EWAS), in which p-values, Z-scores, test statistics are plotted on a scatter plot against their genomic position. Manhattan plots are used for visualizing potential regions of interest in the genome that are associated with a phenotype. Interactive manhattan plots allow the inspection of specific value (e.g. rs number or gene name) by hovering the mouse over a cell, as well as zooming into a region of the genome (e.g. a chromosome) by dragging a rectangle around the relevant area. This work is based on the 'qqman' package by Stephen Turner and the 'plotly.js' engine. It produces similar manhattan and Q-Q plots as the 'manhattan' and 'qq' functions in the 'qqman' package, with the advantage of including extra annotation information and interactive web-based visualizations directly from R. Once uploaded to a 'plotly' account, 'plotly' graphs (and the data behind them) can be viewed and modified in a web browser.
Version: | 0.2.0 |
Depends: | R (≥ 3.0.0) |
Imports: | stats, magrittr (≥ 1.0.1), plotly (≥ 4.5.6), ggplot2 (≥ 2.1.0) |
Suggests: | knitr, rmarkdown |
Published: | 2016-11-16 |
Author: | Sahir Bhatnagar [aut, cre] (http://sahirbhatnagar.com/) |
Maintainer: | Sahir Bhatnagar <sahir.bhatnagar at gmail.com> |
BugReports: | https://github.com/sahirbhatnagar/manhattanly/issues |
License: | MIT + file LICENSE |
URL: | https://github.com/sahirbhatnagar/manhattanly/, http://sahirbhatnagar.com/manhattanly/ |
NeedsCompilation: | no |
Materials: | README NEWS |
CRAN checks: | manhattanly results |
Reference manual: | manhattanly.pdf |
Vignettes: |
Introduction to manhattanly |
Package source: | manhattanly_0.2.0.tar.gz |
Windows binaries: | r-devel: manhattanly_0.2.0.zip, r-release: manhattanly_0.2.0.zip, r-oldrel: manhattanly_0.2.0.zip |
OS X Mavericks binaries: | r-release: manhattanly_0.2.0.tgz, r-oldrel: manhattanly_0.2.0.tgz |
Old sources: | manhattanly archive |
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