Methods to detect genetic markers involved in biological adaptation. 'pcadapt' provides statistical tools for outlier detection based on Principal Component Analysis. Implements the method described in (Luu, 2016) <doi:10.1111/1755-0998.12592>.
Version: | 3.0.4 |
Depends: | robust, MASS, ggplot2, vcfR |
Suggests: | knitr, qvalue, rmarkdown |
Published: | 2017-01-02 |
Author: | Keurcien Luu [aut, cre], Michael Blum [aut], Nicolas Duforet-Frebourg [ctb] |
Maintainer: | Keurcien Luu <keurcien.luu at imag.fr> |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
Copyright: | see file COPYRIGHTS |
NeedsCompilation: | yes |
Materials: | README |
CRAN checks: | pcadapt results |
Reference manual: | pcadapt.pdf |
Vignettes: |
pcadapt |
Package source: | pcadapt_3.0.4.tar.gz |
Windows binaries: | r-devel: pcadapt_3.0.4.zip, r-release: pcadapt_3.0.4.zip, r-oldrel: pcadapt_3.0.4.zip |
OS X Mavericks binaries: | r-release: pcadapt_3.0.4.tgz, r-oldrel: pcadapt_3.0.4.tgz |
Old sources: | pcadapt archive |
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