Methods to detect genetic markers involved in biological adaptation. 'pcadapt' provides statistical tools for outlier detection based on Principal Component Analysis. Implements the method described in (Luu, 2016) <doi:10.1111/1755-0998.12592>.
| Version: | 3.0.4 |
| Depends: | robust, MASS, ggplot2, vcfR |
| Suggests: | knitr, qvalue, rmarkdown |
| Published: | 2017-01-02 |
| Author: | Keurcien Luu [aut, cre], Michael Blum [aut], Nicolas Duforet-Frebourg [ctb] |
| Maintainer: | Keurcien Luu <keurcien.luu at imag.fr> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| Copyright: | see file COPYRIGHTS |
| NeedsCompilation: | yes |
| Materials: | README |
| CRAN checks: | pcadapt results |
| Reference manual: | pcadapt.pdf |
| Vignettes: |
pcadapt |
| Package source: | pcadapt_3.0.4.tar.gz |
| Windows binaries: | r-devel: pcadapt_3.0.4.zip, r-release: pcadapt_3.0.4.zip, r-oldrel: pcadapt_3.0.4.zip |
| OS X Mavericks binaries: | r-release: pcadapt_3.0.4.tgz, r-oldrel: pcadapt_3.0.4.tgz |
| Old sources: | pcadapt archive |
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