The spatial interpolation of genetic distances between samples is based on a modified kriging method that accepts a genetic distance matrix and generates a map of probability of lineage presence. This package also offers tools to generate a map of potential contact zones between groups with user-defined thresholds in the tree to account for old and recent divergence. Additionally, it has functions for IDW interpolation using genetic data and midpoints.
| Version: | 1.1.1 |
| Suggests: | geometry |
| Published: | 2015-11-04 |
| Author: | Pedro Tarroso, Guillermo Velo-Anton, Silvia Carvalho |
| Maintainer: | Pedro Tarroso <ptarroso at cibio.up.pt> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | http://www.r-project.org, http://webpages.icav.up.pt/pessoas/ptarroso/phylin/phylin.html, https://github.com/ptarroso/phylin |
| NeedsCompilation: | no |
| CRAN checks: | phylin results |
| Reference manual: | phylin.pdf |
| Vignettes: |
Phylin: a step-by-step tutorial |
| Package source: | phylin_1.1.1.tar.gz |
| Windows binaries: | r-devel: phylin_1.1.1.zip, r-release: phylin_1.1.1.zip, r-oldrel: phylin_1.1.1.zip |
| OS X Mavericks binaries: | r-release: phylin_1.1.1.tgz, r-oldrel: phylin_1.1.1.tgz |
| Old sources: | phylin archive |
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