An extensible object-oriented framework for the Monte Carlo simulation of sequence evolution written in 100 percent R. It is built on the top of the R.oo and ape packages and uses Gillespie's direct method to simulate substitutions, insertions and deletions.
| Version: | 3.0.2 |
| Depends: | R (≥ 2.15.2), R.oo (≥ 1.13.0), ape (≥ 2.3), compoisson (≥ 0.3), ggplot2 (≥ 0.9.3) |
| Imports: | R.methodsS3 |
| Published: | 2016-09-08 |
| Author: | Botond Sipos, Gregory Jordan |
| Maintainer: | Botond Sipos <sbotond at gmail.com> |
| License: | GPL (≥ 3) |
| URL: | https://github.com/bsipos/phylosim |
| NeedsCompilation: | no |
| CRAN checks: | phylosim results |
| Reference manual: | phylosim.pdf |
| Vignettes: |
PhyloSim |
| Package source: | phylosim_3.0.2.tar.gz |
| Windows binaries: | r-devel: phylosim_3.0.2.zip, r-release: phylosim_3.0.2.zip, r-oldrel: phylosim_3.0.2.zip |
| OS X Mavericks binaries: | r-release: phylosim_3.0.2.tgz, r-oldrel: phylosim_3.0.2.tgz |
| Old sources: | phylosim archive |
| Reverse depends: | pcrcoal |
Please use the canonical form https://CRAN.R-project.org/package=phylosim to link to this page.