rehh: Searching for Footprints of Selection using Haplotype Homozygosity Based Tests

Functions for the detection of footprints of selection on dense SNP data using Extended Homozygosity Haplotype (EHH) based tests. The package includes computation of EHH, iHS (within population) and Rsb or XP-EHH (across pairs of populations) statistics. Various plotting functions are also included to facilitate visualization and interpretation of the results.

Version: 2.0.2
Depends: R (≥ 2.10), rehh.data, gplots, methods
Suggests: knitr, rmarkdown
Published: 2016-11-18
Author: Mathieu Gautier, Alexander Klassmann and Renaud Vitalis
Maintainer: Mathieu Gautier <mathieu.gautier at inra.fr>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
Citation: rehh citation info
Materials: ChangeLog
CRAN checks: rehh results

Downloads:

Reference manual: rehh.pdf
Vignettes: How to use rehh
Package source: rehh_2.0.2.tar.gz
Windows binaries: r-devel: rehh_2.0.2.zip, r-release: rehh_2.0.2.zip, r-oldrel: rehh_2.0.2.zip
OS X Mavericks binaries: r-release: rehh_2.0.2.tgz, r-oldrel: rehh_2.0.2.tgz
Old sources: rehh archive

Reverse dependencies:

Reverse imports: coala

Linking:

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