Functions for the detection of footprints of selection on dense SNP data using Extended Homozygosity Haplotype (EHH) based tests. The package includes computation of EHH, iHS (within population) and Rsb or XP-EHH (across pairs of populations) statistics. Various plotting functions are also included to facilitate visualization and interpretation of the results.
Version: | 2.0.2 |
Depends: | R (≥ 2.10), rehh.data, gplots, methods |
Suggests: | knitr, rmarkdown |
Published: | 2016-11-18 |
Author: | Mathieu Gautier, Alexander Klassmann and Renaud Vitalis |
Maintainer: | Mathieu Gautier <mathieu.gautier at inra.fr> |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
NeedsCompilation: | yes |
Citation: | rehh citation info |
Materials: | ChangeLog |
CRAN checks: | rehh results |
Reference manual: | rehh.pdf |
Vignettes: |
How to use rehh |
Package source: | rehh_2.0.2.tar.gz |
Windows binaries: | r-devel: rehh_2.0.2.zip, r-release: rehh_2.0.2.zip, r-oldrel: rehh_2.0.2.zip |
OS X Mavericks binaries: | r-release: rehh_2.0.2.tgz, r-oldrel: rehh_2.0.2.tgz |
Old sources: | rehh archive |
Reverse imports: | coala |
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