An implementation of sensitivity analysis in phylogenetic regression models, for both linear and logistic phylogenetic regressions. The package is an umbrella of statistical and graphical methods that estimate and report different types of uncertainty in PGLS models: (i) Species Sampling uncertainty (sample size; influential species and clades). (ii) Phylogenetic uncertainty (different topologies and/or branch lengths). (iii) Data uncertainty (intraspecific variation and measurement error).
| Version: | 0.6.0 |
| Depends: | R (≥ 3.1.0), ape (≥ 3.3), phylolm (≥ 2.4), ggplot2 (≥ 2.1.0) |
| Imports: | caper (≥ 0.5.2) |
| Suggests: | knitr, rmarkdown |
| Published: | 2017-01-14 |
| Author: | Gustavo Paterno [cre, aut], Gijsbert Werner [aut], Caterina Penone [aut] |
| Maintainer: | Gustavo Paterno <paternogbc at gmail.com> |
| BugReports: | https://github.com/paternogbc/sensiPhy/issues |
| License: | GPL-2 |
| URL: | https://github.com/paternogbc/sensiPhy |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | sensiPhy results |
| Reference manual: | sensiPhy.pdf |
| Vignettes: |
Vignette Title |
| Package source: | sensiPhy_0.6.0.tar.gz |
| Windows binaries: | r-devel: sensiPhy_0.6.0.zip, r-release: sensiPhy_0.6.0.zip, r-oldrel: sensiPhy_0.6.0.zip |
| OS X Mavericks binaries: | r-release: sensiPhy_0.6.0.tgz, r-oldrel: sensiPhy_0.6.0.tgz |
| Old sources: | sensiPhy archive |
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