A toolbox for a construction of protein-protein interaction networks through the 'STRING' application programming interface, and an inference of Gaussian networks through 'SIMoNe' and 'WGCNA' approach, from DE genes analysis results and expression data. Additional functions are provided to import automatically networks into an active 'Cytoscape' session.
| Version: | 1.1 |
| Imports: | AnnotationDbi, GO.db, VennDiagram, simone, biomaRt, limma, pspearman, igraph, httr, RJSONIO, RCurl, org.Hs.eg.db, graphics, grDevices, stats, utils |
| Suggests: | knitr |
| Published: | 2015-07-22 |
| Author: | Emmanuel Chaplais, Henri-Jean Garchon |
| Maintainer: | Emmanuel Chaplais <emmanuel.chaplais at inserm.fr> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| CRAN checks: | stringgaussnet results |
| Reference manual: | stringgaussnet.pdf |
| Vignettes: |
User's guide |
| Package source: | stringgaussnet_1.1.tar.gz |
| Windows binaries: | r-devel: stringgaussnet_1.1.zip, r-release: stringgaussnet_1.1.zip, r-oldrel: stringgaussnet_1.1.zip |
| OS X Mavericks binaries: | r-release: stringgaussnet_1.1.tgz, r-oldrel: stringgaussnet_1.0.tgz |
| Old sources: | stringgaussnet archive |
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