Last updated on 2017-07-26 01:56:25.
Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
---|---|---|---|---|---|---|
r-devel-linux-x86_64-debian-clang | 2.2-9 | 9.47 | 117.78 | 127.25 | NOTE | |
r-devel-linux-x86_64-debian-gcc | 2.2-9 | 8.89 | 122.23 | 131.12 | NOTE | |
r-devel-linux-x86_64-fedora-clang | 2.2-9 | 109.60 | NOTE | |||
r-devel-linux-x86_64-fedora-gcc | 2.2-9 | 100.28 | NOTE | |||
r-devel-windows-ix86+x86_64 | 2.2-9 | 34.00 | 94.00 | 128.00 | NOTE | |
r-patched-linux-x86_64 | 2.2-9 | 8.90 | 117.47 | 126.37 | NOTE | |
r-patched-solaris-x86 | 2.2-9 | 252.10 | NOTE | |||
r-release-linux-x86_64 | 2.2-9 | 9.15 | 116.27 | 125.41 | NOTE | |
r-release-windows-ix86+x86_64 | 2.2-9 | 29.00 | 119.00 | 148.00 | NOTE | |
r-release-osx-x86_64 | 2.2-9 | NOTE | ||||
r-oldrel-windows-ix86+x86_64 | 2.2-9 | 28.00 | 130.00 | 158.00 | NOTE | |
r-oldrel-osx-x86_64 | 2.2-9 | WARN |
Version: 2.2-9
Check: DESCRIPTION meta-information
Result: NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
‘tcltk’
A package should be listed in only one of these fields.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 2.2-9
Check: dependencies in R code
Result: NOTE
'library' or 'require' call to ‘rootSolve’ which was already attached by Depends.
Please remove these calls from your code.
'library' or 'require' calls in package code:
‘kinship2’ ‘tcltk’
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
‘rootSolve’ ‘survival’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64
Version: 2.2-9
Check: foreign function calls
Result: NOTE
Call with DUP:
.C("powerR", as.integer(numOffspring), as.integer(numParents),
as.integer(numFamilies), as.integer(additionalOffspringPhenos),
as.integer(ascertainment), as.integer(modelGen), as.integer(modelTest),
as.double(afreqMarker), as.double(penAA), as.double(penAB),
as.double(penBB), as.double(heritability), as.double(contsAscertainmentLower),
as.double(contsAscertainmentUpper), as.double(pDiseaseAlleleGivenMarkerAllele),
as.double(afreqDSL), as.double(qnorm(1 - alpha/2)), as.double(offset),
as.integer(numSim), as.integer(ITERATION_KILLER), result,
DUP = FALSE)
DUP is no longer supported and will be ignored.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64
Version: 2.2-9
Check: R code for possible problems
Result: NOTE
c2bat: no visible global function definition for ‘read.table’
getVersion: no visible global function definition for
‘installed.packages’
loadPbatlog: no visible global function definition for ‘read.csv’
loadPbatlog.bad: no visible global function definition for ‘read.table’
loadPbatlogExtended: no visible global function definition for
‘read.csv’
obfuscate: no visible global function definition for ‘runif’
pbat.powerCmd: no visible global function definition for ‘qnorm’
pbat.status: no visible global function definition for ‘tail’
pbatGUI.mainForm : onPlot: no visible global function definition for
‘plot’
pen_allelicOR: no visible global function definition for ‘optim’
pen_ar: no visible global function definition for ‘optim’
pen_or1: no visible global function definition for ‘multiroot’
pen_or1: no visible global function definition for ‘runif’
pen_or1_a: no visible global function definition for ‘optim’
pen_or1_a: no visible global function definition for ‘runif’
plot.pedigree : points.sym : circle: no visible global function
definition for ‘par’
plot.pedigree : points.sym : circle: no visible global function
definition for ‘polygon’
plot.pedigree : points.sym : square: no visible global function
definition for ‘par’
plot.pedigree : points.sym : square: no visible global function
definition for ‘polygon’
plot.pedigree : points.sym : diamond: no visible global function
definition for ‘par’
plot.pedigree : points.sym : diamond: no visible global function
definition for ‘polygon’
plot.pedigree : points.sym : triangle: no visible global function
definition for ‘par’
plot.pedigree : points.sym : triangle: no visible global function
definition for ‘polygon’
plot.pedigree : points.sym: no visible global function definition for
‘segments’
plot.pedigree: no visible global function definition for
‘align.pedigree’
plot.pedigree: no visible global function definition for ‘par’
plot.pedigree: no visible global function definition for ‘plot’
plot.pedigree: no visible global function definition for ‘text’
plot.pedigree: no visible global function definition for ‘segments’
plot.pedigree : arcconnect: no visible global function definition for
‘lines’
plotPed: no visible global function definition for ‘pdf’
plotPed: no visible global function definition for ‘pedigree’
plotPed: no visible global function definition for ‘title’
plotPed: no visible global function definition for ‘dev.off’
read.badheader: no visible global function definition for ‘read.table’
write.badheader: no visible global function definition for
‘write.table’
write.pbat: no visible global function definition for ‘write.table’
write.pbat.csv: no visible global function definition for ‘write.csv’
write.pbat.csv: no visible global function definition for ‘write.table’
Undefined global functions or variables:
align.pedigree dev.off installed.packages lines multiroot optim par
pdf pedigree plot polygon qnorm read.csv read.table runif segments
tail text title write.csv write.table
Consider adding
importFrom("grDevices", "dev.off", "pdf")
importFrom("graphics", "lines", "par", "plot", "polygon", "segments",
"text", "title")
importFrom("stats", "optim", "qnorm", "runif")
importFrom("utils", "installed.packages", "read.csv", "read.table",
"tail", "write.csv", "write.table")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64
Version: 2.2-9
Check: compiled code
Result: NOTE
File ‘pbatR/libs/pbatR.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.2-9
Check: dependencies in R code
Result: NOTE
Invalid MIT-MAGIC-COOKIE-1 key'library' or 'require' call to ‘rootSolve’ which was already attached by Depends.
Please remove these calls from your code.
'library' or 'require' calls in package code:
‘kinship2’ ‘tcltk’
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
‘rootSolve’ ‘survival’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavor: r-oldrel-osx-x86_64
Version: 2.2-9
Check: S3 generic/method consistency
Result: WARN
Invalid MIT-MAGIC-COOKIE-1 key
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Flavor: r-oldrel-osx-x86_64
Version: 2.2-9
Check: replacement functions
Result: WARN
Invalid MIT-MAGIC-COOKIE-1 key
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Flavor: r-oldrel-osx-x86_64
Version: 2.2-9
Check: foreign function calls
Result: NOTE
Invalid MIT-MAGIC-COOKIE-1 keyCall with DUP:
.C("powerR", as.integer(numOffspring), as.integer(numParents),
as.integer(numFamilies), as.integer(additionalOffspringPhenos),
as.integer(ascertainment), as.integer(modelGen), as.integer(modelTest),
as.double(afreqMarker), as.double(penAA), as.double(penAB),
as.double(penBB), as.double(heritability), as.double(contsAscertainmentLower),
as.double(contsAscertainmentUpper), as.double(pDiseaseAlleleGivenMarkerAllele),
as.double(afreqDSL), as.double(qnorm(1 - alpha/2)), as.double(offset),
as.integer(numSim), as.integer(ITERATION_KILLER), result,
DUP = FALSE)
DUP is no longer supported and will be ignored.
Flavor: r-oldrel-osx-x86_64
Version: 2.2-9
Check: R code for possible problems
Result: NOTE
Invalid MIT-MAGIC-COOKIE-1 keyc2bat: no visible global function definition for ‘read.table’
getVersion: no visible global function definition for
‘installed.packages’
loadPbatlog: no visible global function definition for ‘read.csv’
loadPbatlog.bad: no visible global function definition for ‘read.table’
loadPbatlogExtended: no visible global function definition for
‘read.csv’
obfuscate: no visible global function definition for ‘runif’
pbat.powerCmd: no visible global function definition for ‘qnorm’
pbat.status: no visible global function definition for ‘tail’
pbatGUI.mainForm : onPlot: no visible global function definition for
‘plot’
pen_allelicOR: no visible global function definition for ‘optim’
pen_ar: no visible global function definition for ‘optim’
pen_or1: no visible global function definition for ‘multiroot’
pen_or1: no visible global function definition for ‘runif’
pen_or1_a: no visible global function definition for ‘optim’
pen_or1_a: no visible global function definition for ‘runif’
plot.pedigree : points.sym : circle: no visible global function
definition for ‘par’
plot.pedigree : points.sym : circle: no visible global function
definition for ‘polygon’
plot.pedigree : points.sym : square: no visible global function
definition for ‘par’
plot.pedigree : points.sym : square: no visible global function
definition for ‘polygon’
plot.pedigree : points.sym : diamond: no visible global function
definition for ‘par’
plot.pedigree : points.sym : diamond: no visible global function
definition for ‘polygon’
plot.pedigree : points.sym : triangle: no visible global function
definition for ‘par’
plot.pedigree : points.sym : triangle: no visible global function
definition for ‘polygon’
plot.pedigree : points.sym: no visible global function definition for
‘segments’
plot.pedigree: no visible global function definition for
‘align.pedigree’
plot.pedigree: no visible global function definition for ‘par’
plot.pedigree: no visible global function definition for ‘plot’
plot.pedigree: no visible global function definition for ‘text’
plot.pedigree: no visible global function definition for ‘segments’
plot.pedigree : arcconnect: no visible global function definition for
‘lines’
plotPed: no visible global function definition for ‘pdf’
plotPed: no visible global function definition for ‘pedigree’
plotPed: no visible global function definition for ‘title’
plotPed: no visible global function definition for ‘dev.off’
read.badheader: no visible global function definition for ‘read.table’
write.badheader: no visible global function definition for
‘write.table’
write.pbat: no visible global function definition for ‘write.table’
write.pbat.csv: no visible global function definition for ‘write.csv’
write.pbat.csv: no visible global function definition for ‘write.table’
Undefined global functions or variables:
align.pedigree dev.off installed.packages lines multiroot optim par
pdf pedigree plot polygon qnorm read.csv read.table runif segments
tail text title write.csv write.table
Consider adding
importFrom("grDevices", "dev.off", "pdf")
importFrom("graphics", "lines", "par", "plot", "polygon", "segments",
"text", "title")
importFrom("stats", "optim", "qnorm", "runif")
importFrom("utils", "installed.packages", "read.csv", "read.table",
"tail", "write.csv", "write.table")
to your NAMESPACE file.
Flavor: r-oldrel-osx-x86_64
Version: 2.2-9
Check: for missing documentation entries
Result: WARN
Invalid MIT-MAGIC-COOKIE-1 key
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavor: r-oldrel-osx-x86_64
Version: 2.2-9
Check: for code/documentation mismatches
Result: WARN
Invalid MIT-MAGIC-COOKIE-1 key
Invalid MIT-MAGIC-COOKIE-1 key
Invalid MIT-MAGIC-COOKIE-1 key
Flavor: r-oldrel-osx-x86_64
Version: 2.2-9
Check: Rd \usage sections
Result: NOTE
Invalid MIT-MAGIC-COOKIE-1 key
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavor: r-oldrel-osx-x86_64