CRAN Package Check Results for Package qtl

Last updated on 2017-07-26 01:56:34.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.41-6 26.36 264.73 291.09 NOTE
r-devel-linux-x86_64-debian-gcc 1.41-6 24.14 264.91 289.04 NOTE
r-devel-linux-x86_64-fedora-clang 1.41-6 543.11 NOTE
r-devel-linux-x86_64-fedora-gcc 1.41-6 515.78 NOTE
r-devel-windows-ix86+x86_64 1.41-6 158.00 534.00 692.00 NOTE
r-patched-linux-x86_64 1.41-6 21.80 271.91 293.71 NOTE
r-patched-solaris-x86 1.41-6 572.90 NOTE
r-release-linux-x86_64 1.41-6 21.81 272.84 294.65 NOTE
r-release-windows-ix86+x86_64 1.41-6 114.00 637.00 751.00 NOTE
r-release-osx-x86_64 1.41-6 NOTE
r-oldrel-windows-ix86+x86_64 1.41-6 115.00 445.00 560.00 NOTE
r-oldrel-osx-x86_64 1.41-6 NOTE

Check Details

Version: 1.41-6
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.errorlod plot.geno plot.info plot.missing plot.pheno plot.pxg
     plot.rf
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.41-6
Check: installed package size
Result: NOTE
     installed size is 9.9Mb
     sub-directories of 1Mb or more:
     contrib 3.8Mb
     doc 2.9Mb
     libs 1.3Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.41-6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Warning in fixXgeno.f2(cross, alleles) :
     --Assuming that all individuals are female.
    
    Warning in checkcovar(cross, pheno.col, addcovar, intcovar, perm.strata, :
     Dropping 4 individuals with missing phenotypes.
    
    Warning in checkcovar(cross, pheno.col, addcovar, intcovar, perm.strata, :
     Dropping 4 individuals with missing phenotypes.
    
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'bcsft.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `fullpage.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.4 \marginparwidth
     0pt^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64