CRAN Package Check Results for Package scrime

Last updated on 2017-07-26 01:56:39.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3.3 1.05 33.34 34.39 NOTE
r-devel-linux-x86_64-debian-gcc 1.3.3 1.05 31.73 32.78 NOTE
r-devel-linux-x86_64-fedora-clang 1.3.3 41.18 NOTE
r-devel-linux-x86_64-fedora-gcc 1.3.3 40.71 NOTE
r-devel-windows-ix86+x86_64 1.3.3 6.00 56.00 62.00 NOTE
r-patched-linux-x86_64 1.3.3 1.06 32.03 33.08 NOTE
r-patched-solaris-x86 1.3.3 48.90 NOTE
r-release-linux-x86_64 1.3.3 1.06 31.93 33.00 NOTE
r-release-windows-ix86+x86_64 1.3.3 3.00 53.00 56.00 NOTE
r-release-osx-x86_64 1.3.3 NOTE
r-oldrel-windows-ix86+x86_64 1.3.3 4.00 47.00 51.00 NOTE
r-oldrel-osx-x86_64 1.3.3 NOTE

Check Details

Version: 1.3.3
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘MASS’ ‘oligoClasses’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.3.3
Check: R code for possible problems
Result: NOTE
    abf: no visible global function definition for ‘qnorm’
    abf: no visible global function definition for ‘dnorm’
    analyse.models: no visible global function definition for ‘read.table’
    buildSNPannotation: no visible global function definition for ‘db’
    buildSNPannotation: no visible global function definition for
     ‘dbListFields’
    buildSNPannotation: no visible global function definition for
     ‘dbGetQuery’
    chisqClass2: no visible global function definition for ‘pchisq’
    colEpistatic: no visible global function definition for ‘glm’
    colEpistatic: no visible global function definition for ‘is’
    colEpistatic: no visible global function definition for ‘pchisq’
    compChisqPval: no visible global function definition for ‘pchisq’
    computeContCells: no visible global function definition for ‘as.dist’
    dist2Mats: no visible global function definition for ‘dist’
    fblr : trunc.norm: no visible global function definition for ‘qnorm’
    fblr : trunc.norm: no visible global function definition for ‘pnorm’
    fblr : trunc.norm: no visible global function definition for ‘runif’
    fblr : gen.cand: no visible global function definition for ‘runif’
    fblr : change: no visible global function definition for ‘runif’
    fblr: no visible global function definition for ‘write.table’
    fblr: no visible global function definition for ‘rgamma’
    fblr: no visible global function definition for ‘runif’
    fblr: no visible global function definition for ‘mvrnorm’
    fblr: no visible global function definition for ‘pnorm’
    fblr.weight : trunc.norm: no visible global function definition for
     ‘qnorm’
    fblr.weight : trunc.norm: no visible global function definition for
     ‘pnorm’
    fblr.weight : trunc.norm: no visible global function definition for
     ‘runif’
    fblr.weight : gen.cand: no visible global function definition for
     ‘runif’
    fblr.weight : change: no visible global function definition for ‘runif’
    fblr.weight: no visible global function definition for ‘write.table’
    fblr.weight: no visible global function definition for ‘rgamma’
    fblr.weight: no visible global function definition for ‘runif’
    fblr.weight: no visible global function definition for ‘mvrnorm’
    fblr.weight: no visible global function definition for ‘pnorm’
    pamCat: no visible global function definition for ‘predict’
    predictFBLR : predictBLR: no visible global function definition for
     ‘pnorm’
    predictFBLR: no visible global function definition for ‘read.table’
    rowCATTs: no visible global function definition for ‘pchisq’
    rowChisq2Class: no visible global function definition for ‘pchisq’
    rowChisqMultiClass: no visible global function definition for ‘pchisq’
    rowCors: no visible global function definition for ‘sd’
    rowHWEs: no visible global function definition for ‘pchisq’
    rowMsquares: no visible global function definition for ‘pchisq’
    rowTrendFuzzy: no visible global function definition for ‘pnorm’
    rowTrendStats: no visible global function definition for ‘pchisq’
    simulateSNPcatResponse: no visible global function definition for
     ‘runif’
    simulateSNPglm: no visible global function definition for ‘runif’
    simulateSNPglm: no visible global function definition for ‘rbinom’
    simulateSNPs: no visible global function definition for ‘runif’
    Undefined global functions or variables:
     as.dist db dbGetQuery dbListFields dist dnorm glm is mvrnorm pchisq
     pnorm predict qnorm rbinom read.table rgamma runif sd write.table
    Consider adding
     importFrom("methods", "is")
     importFrom("stats", "as.dist", "dist", "dnorm", "glm", "pchisq",
     "pnorm", "predict", "qnorm", "rbinom", "rgamma", "runif",
     "sd")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.3.3
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘oligoClasses’
Flavor: r-release-osx-x86_64