Implements routines for metagenome sample taxonomy assignments collection, aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2, BWA, Kraken, and MetaPhlAn. Produces SVG and PDF heatmap-like plots comparing taxa abundances across projects.
| Version: | 1.0.1 |
| Depends: | R (≥ 3.1.0) |
| Imports: | reshape2, plyr, dplyr, data.table, ggplot2, Cairo |
| Suggests: | testthat |
| Published: | 2017-03-02 |
| Author: | Pavel Senin [aut, cre] |
| Maintainer: | Pavel Senin <psenin at lanl.gov> |
| BugReports: | https://github.com/seninp-bioinfo/MetaComp/issues |
| License: | GPL-2 |
| URL: | https://github.com/seninp-bioinfo/MetaComp |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | MetaComp results |
| Reference manual: | MetaComp.pdf |
| Package source: | MetaComp_1.0.1.tar.gz |
| Windows binaries: | r-devel: MetaComp_1.0.1.zip, r-release: MetaComp_1.0.1.zip, r-oldrel: MetaComp_1.0.1.zip |
| OS X El Capitan binaries: | r-release: MetaComp_1.0.1.tgz |
| OS X Mavericks binaries: | r-oldrel: MetaComp_1.0.1.tgz |
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