inctools: Incidence Estimation Tools

Tools for estimating incidence from biomarker data in cross- sectional surveys, and for calibrating tests for recent infection. Implements and extends the method of Kassanjee et al. (2012) <doi:10.1097/EDE.0b013e3182576c07>.

Version: 1.0.10
Depends: R (≥ 3.2.1)
Imports: stats, cubature, ggplot2, glm2, MASS, magrittr, dplyr, plyr, pracma, foreach, parallel, doParallel, utils
Suggests: survey, knitr, rmarkdown
Published: 2017-04-13
Author: Alex Welte [aut], Eduard Grebe [cre, aut], Avery McIntosh [aut], Petra Bäumler [aut], Reshma Kassanjee [ctb], Hilmarie Brand [ctb], Cari Van Schalkwyk [ctb], Yuruo Li [ctb], Simon Daniel [ctb], Stefano Ongarello [aut], Yusuke Asai [ctb]
Maintainer: Eduard Grebe <eduardgrebe at>
License: GPL-3
NeedsCompilation: no
CRAN checks: inctools results


Reference manual: inctools.pdf
Vignettes: Estimating incidence
Overview of inctools
Survey design
Test calibration
Package source: inctools_1.0.10.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X El Capitan binaries: r-release: inctools_1.0.10.tgz
OS X Mavericks binaries: r-oldrel: inctools_1.0.10.tgz
Old sources: inctools archive


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