Phylogenetic analysis in R: Estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation.
Version: | 2.2.0 |
Depends: | R (≥ 3.2.0), ape (≥ 4.1) |
Imports: | quadprog, igraph (≥ 1.0), Matrix, parallel, methods, utils, stats, graphics, grDevices, fastmatch, magrittr, Rcpp (≥ 0.12.0) |
LinkingTo: | Rcpp |
Suggests: | testthat, seqLogo, seqinr, xtable, flashClust, rgl, knitr, rmarkdown, Biostrings |
Published: | 2017-04-03 |
Author: | Klaus Schliep [aut, cre], Emmanuel Paradis [aut], Leonardo de Oliveira Martins [aut], Alastair Potts [aut], Tim W. White [aut], Cyrill Stachniss [ctb], Michelle Kendall [ctb] |
Maintainer: | Klaus Schliep <klaus.schliep at gmail.com> |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
URL: | https://github.com/KlausVigo/phangorn |
NeedsCompilation: | yes |
Citation: | phangorn citation info |
Materials: | README NEWS |
In views: | Genetics, Phylogenetics |
CRAN checks: | phangorn results |
Reference manual: | phangorn.pdf |
Vignettes: |
Ancestral Sequence Reconstruction Constructing phylogenetic trees Advanced features IntertwiningTreesAndNetworks Splits and Networx |
Package source: | phangorn_2.2.0.tar.gz |
Windows binaries: | r-devel: phangorn_2.2.0.zip, r-release: phangorn_2.2.0.zip, r-oldrel: phangorn_2.2.0.zip |
OS X El Capitan binaries: | r-release: phangorn_2.2.0.tgz |
OS X Mavericks binaries: | r-oldrel: phangorn_2.2.0.tgz |
Old sources: | phangorn archive |
Reverse depends: | apex, MonoPhy, phybreak |
Reverse imports: | BoSSA, coalescentMCMC, CommT, corHMM, indelmiss, markophylo, OUwie, paleotree, phytools, poppr, RADami, RAM, rdiversity, recluster, rwty, SeqFeatR, strataG, timetree, TKF, treespace |
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