Tools for the exploration of distributions of phylogenetic trees. This package includes a shiny interface which can be started from R using 'treespaceServer()'.
| Version: | 1.0.0 |
| Depends: | R (≥ 3.1.2), ape, ade4 |
| Imports: | adegenet, adegraphics, adephylo, combinat, compiler, distory, fields, htmlwidgets, MASS, phangorn, Rcpp, RLumShiny, scatterD3, shiny, shinyBS, utils |
| LinkingTo: | Rcpp |
| Suggests: | igraph, RColorBrewer, ggplot2, testthat, knitr, rmarkdown, rgl |
| Published: | 2017-03-17 |
| Author: | Thibaut Jombart [aut, cre], Michelle Kendall [aut], Jacob Almagro-Garcia [aut], Caroline Colijn [aut] |
| Maintainer: | Thibaut Jombart <thibautjombart at gmail.com> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | yes |
| Materials: | README |
| CRAN checks: | treespace results |
| Reference manual: | treespace.pdf |
| Vignettes: |
treespace worked example: Dengue trees treespace worked example: Transmission trees treespace: exploration of landscapes of phylogenetic trees |
| Package source: | treespace_1.0.0.tar.gz |
| Windows binaries: | r-devel: treespace_1.0.0.zip, r-release: treespace_1.0.0.zip, r-oldrel: treespace_1.0.0.zip |
| OS X El Capitan binaries: | r-release: treespace_1.0.0.tgz |
| OS X Mavericks binaries: | r-oldrel: treespace_1.0.0.tgz |
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