CRAN Package Check Results for Package GMD

Last updated on 2017-07-31 01:46:59.

Check Details

Version: 0.3.3
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.elbow plot.gmdm plot.gmdp plot.mhist plot.mhist.summary
     print.gmdm print.gmdp summary.gmdp
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.3.3
Check: R code for possible problems
Result: NOTE
    .file_path_as_absolute: no visible global function definition for
     ‘file_test’
    .plot.text: no visible global function definition for ‘par’
    .plot.text: no visible global function definition for ‘plot’
    .plot.text: no visible global function definition for ‘rect’
    .plot.text: no visible global function definition for ‘text’
    bedgraph.to.depth: no visible global function definition for
     ‘read.table’
    ghist: no visible global function definition for ‘hist’
    heatmap.3: no visible global function definition for ‘par’
    heatmap.3: no visible global function definition for ‘flush.console’
    heatmap.3: no visible global function definition for ‘layout’
    heatmap.3: no visible global function definition for ‘image’
    heatmap.3: no visible global function definition for ‘axis’
    heatmap.3: no visible global function definition for ‘text’
    heatmap.3: no visible global function definition for ‘mtext’
    heatmap.3: no visible global function definition for ‘rect’
    heatmap.3: no visible global function definition for ‘abline’
    heatmap.3: no visible global function definition for ‘lines’
    heatmap.3: no visible global function definition for ‘plot’
    heatmap.3: no visible global function definition for ‘title’
    heatmap.3: no visible global function definition for ‘hist’
    legend: no visible global function definition for ‘par’
    legend : rect2: no visible global function definition for ‘rect’
    legend : segments2: no visible global function definition for
     ‘segments’
    legend : points2: no visible global function definition for ‘points’
    legend : text2: no visible global function definition for ‘text’
    legend: no visible global function definition for ‘strwidth’
    legend: no visible global function definition for ‘xinch’
    legend: no visible global function definition for ‘yinch’
    legend: no visible global function definition for ‘strheight’
    plot.elbow: no visible global function definition for ‘par’
    plot.elbow: no visible global function definition for ‘plot’
    plot.elbow: no visible global function definition for ‘abline’
    plot.elbow: no visible global function definition for ‘mtext’
    plot.elbow: no visible global function definition for ‘text’
    plot.elbow: no visible global function definition for ‘title’
    plot.gmdm: no visible global function definition for ‘par’
    plot.gmdm: no visible global function definition for ‘plot’
    plot.gmdm: no visible global function definition for ‘text’
    plot.gmdm: no visible global function definition for ‘rect’
    plot.gmdm: no visible global function definition for ‘mtext’
    plot.mhist: no visible global function definition for ‘plot’
    plot.mhist: no visible global function definition for ‘abline’
    plot.mhist: no visible global function definition for ‘mtext’
    plot.mhist: no visible global function definition for ‘axis’
    plot.mhist: no visible global function definition for ‘rect’
    plot.mhist: no visible global function definition for ‘lines’
    plot.mhist: no visible global function definition for ‘par’
    plot.mhist.summary: no visible global function definition for ‘par’
    ts2df: no visible global function definition for ‘is’
    Undefined global functions or variables:
     abline axis file_test flush.console hist image is layout lines mtext
     par plot points read.table rect segments strheight strwidth text
     title xinch yinch
    Consider adding
     importFrom("graphics", "abline", "axis", "hist", "image", "layout",
     "lines", "mtext", "par", "plot", "points", "rect",
     "segments", "strheight", "strwidth", "text", "title",
     "xinch", "yinch")
     importFrom("methods", "is")
     importFrom("utils", "file_test", "flush.console", "read.table")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.3.3
Check: compiled code
Result: NOTE
    File ‘GMD/libs/GMD.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.3.3
Check: DESCRIPTION meta-information
Result: NOTE
    NeedsCompilation field should likely be 'yes'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 0.3.3
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    that memeber histograms have the same order of the bins.
    
    Warning in as.mhist(tmp.x) :
     `bins' are not specified; use automatic numbering instead under assumption
    that memeber histograms have the same order of the bins.
    
    Warning in as.mhist(tmp.x) :
     `bins' are not specified; use automatic numbering instead under assumption
    that memeber histograms have the same order of the bins.
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'GMD-data-processing.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `appendix.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.10 ^^M
    
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64