CRAN Package Check Results for Package cherry

Last updated on 2017-07-31 01:46:51.

Check Details

Version: 0.6-11
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘gurobi’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.6-11
Check: R code for possible problems
Result: NOTE
    DAGmethod: no visible global function definition for ‘flush.console’
    curveFisher: no visible global function definition for ‘qchisq’
    curveFisher: no visible global function definition for ‘lines’
    curveFisher: no visible global function definition for ‘legend’
    curveMeinshausen: no visible global function definition for ‘lines’
    curveMeinshausen: no visible global function definition for ‘legend’
    curveSimes: no visible global function definition for ‘lines’
    curveSimes: no visible global function definition for ‘legend’
    curveSimes_old: no visible global function definition for ‘lines’
    curveSimes_old: no visible global function definition for ‘legend’
    pick: no visible global function definition for ‘barplot’
    pick: no visible global function definition for ‘text’
    pickFisher : <anonymous>: no visible global function definition for
     ‘qchisq’
    regionmethod: no visible global function definition for ‘flush.console’
    regionplot: no visible global function definition for ‘plot’
    regionplot: no visible global function definition for ‘axis’
    regionplot: no visible global function definition for ‘polygon’
    regionplot: no visible global function definition for ‘par’
    regionplot: no visible global function definition for ‘legend’
    regionplot2 : drawsegment: no visible global function definition for
     ‘segments’
    regionplot2: no visible global function definition for ‘plot’
    regionplot2: no visible global function definition for ‘axis’
    regionplot2: no visible global function definition for ‘par’
    regionplot2: no visible global function definition for ‘legend’
    structuredHolm: no visible global function definition for
     ‘flush.console’
    Undefined global functions or variables:
     axis barplot flush.console legend lines par plot polygon qchisq
     segments text
    Consider adding
     importFrom("graphics", "axis", "barplot", "legend", "lines", "par",
     "plot", "polygon", "segments", "text")
     importFrom("stats", "qchisq")
     importFrom("utils", "flush.console")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.6-11
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘multtest’ ‘gurobi’
Flavor: r-release-osx-x86_64

Version: 0.6-11
Check: examples
Result: ERROR
    Running examples in ‘cherry-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: Select with shortcuts
    > ### Title: Confidence limits for the number of true hypotheses, with
    > ### shortcuts.
    > ### Aliases: pickFisher pickSimes pickMeinshausen curveFisher curveSimes
    > ### curveMeinshausen
    > ### Keywords: htest
    >
    > ### ** Examples
    >
    > # Fisher's method
    > data(NAEP)
    > pickFisher(NAEP, c("NH", "NC", "IA"))
    3 hypotheses selected. At confidence level 0.95:
    False null-hypotheses >= 2; True null-hypotheses <= 1.
    > pickFisher(NAEP, 1:7)
    7 hypotheses selected. At confidence level 0.95:
    False null-hypotheses >= 6; True null-hypotheses <= 1.
    > curveFisher(NAEP)
    > curveFisher(NAEP, order=7:1)
    >
    >
    > # Simes method
    > hom <- hommelFast(NAEP)
    > pickSimes(hom, c("NH", "NC", "IA"))
    3 hypotheses selected. At confidence level 0.95:
    False null-hypotheses >= 2; True null-hypotheses <= 1.
    > pickSimes(hom, 1:7)
    7 hypotheses selected. At confidence level 0.95:
    False null-hypotheses >= 6; True null-hypotheses <= 1.
    > curveSimes(hom)
    > curveSimes(hom, select=1:7)
    >
    > # Meinshausen's method
    > library(multtest)
    Error in library(multtest) : there is no package called ‘multtest’
    Execution halted
Flavor: r-release-osx-x86_64