Last updated on 2017-07-31 01:47:01.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1 | 3.14 | 39.67 | 42.81 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.1 | 3.24 | 32.19 | 35.42 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1 | 67.63 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1 | 65.41 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 1.1 | 11.00 | 81.00 | 92.00 | ERROR | |
| r-patched-linux-x86_64 | 1.1 | 2.91 | 39.50 | 42.41 | ERROR | |
| r-patched-solaris-x86 | 1.1 | 87.30 | ERROR | |||
| r-release-linux-x86_64 | 1.1 | 2.98 | 38.84 | 41.82 | ERROR | |
| r-release-windows-ix86+x86_64 | 1.1 | 7.00 | 78.00 | 85.00 | ERROR | |
| r-release-osx-x86_64 | 1.1 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.1 | 10.00 | 53.00 | 63.00 | ERROR | |
| r-oldrel-osx-x86_64 | 1.1 | ERROR |
Version: 1.1
Check: R code for possible problems
Result: NOTE
viewstr : <anonymous>: possible error in view.image.2d(x, width = 250,
height = 250): unused arguments (width = 250, height = 250)
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.1
Check: examples
Result: ERROR
Running examples in ‘iqspr-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: QSPRpred-class
> ### Title: QSPRpredictor class
> ### Aliases: QSPRpred-class QSPRpred
>
> ### ** Examples
>
> data(qspr.data)
> smis <- paste(qspr.data[,1])
> ty <- qspr.data[,c(2,5)]
> trainidx <- sample(1:nrow(qspr.data), 5000)
> testidx <- (1:nrow(qspr.data))[-trainidx][1:100]
>
> data(qsprpred_EG_5k)
> ## same as run => qsprpred_EG_5k <-
>
> #-----arguments
> #smis: SMILES string set (character vector) for training
> #y: property sets (matrix) for training
> #v_ymin: minimum value of target properties
> #v_ymax: maximum value of target properties
> #v_descriptor: function transforming SMILES strings to feature matrix
> #v_fpnames: character vectors indicating finger print used in the descriptor
> #w0: matrix representing prior mean of coeffients in linear regression model
> #V0_inv: matrix representing the prior variance of coeffients in linear regression model
> #a0: numeric value representing the location parameter in gamma prior
> #b0: numeric value representing the shape parameter in gamma prior
> #------
>
> predictions <- qsprpred_EG_5k$qspr_predx(smis[testidx])
get fingerprint graph from SMILES strings
Error in fp.to.matrix(fp.obj) : could not find function "fp.to.matrix"
Calls: <Anonymous> -> descriptor
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.1
Check: installed package size
Result: NOTE
installed size is 6.7Mb
sub-directories of 1Mb or more:
data 6.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.1
Check: examples
Result: ERROR
Running examples in ‘iqspr-Ex.R’ failed
The error most likely occurred in:
> ### Name: QSPRpred-class
> ### Title: QSPRpredictor class
> ### Aliases: QSPRpred-class QSPRpred
>
> ### ** Examples
>
> data(qspr.data)
> smis <- paste(qspr.data[,1])
> ty <- qspr.data[,c(2,5)]
> trainidx <- sample(1:nrow(qspr.data), 5000)
> testidx <- (1:nrow(qspr.data))[-trainidx][1:100]
>
> data(qsprpred_EG_5k)
> ## same as run => qsprpred_EG_5k <-
>
> #-----arguments
> #smis: SMILES string set (character vector) for training
> #y: property sets (matrix) for training
> #v_ymin: minimum value of target properties
> #v_ymax: maximum value of target properties
> #v_descriptor: function transforming SMILES strings to feature matrix
> #v_fpnames: character vectors indicating finger print used in the descriptor
> #w0: matrix representing prior mean of coeffients in linear regression model
> #V0_inv: matrix representing the prior variance of coeffients in linear regression model
> #a0: numeric value representing the location parameter in gamma prior
> #b0: numeric value representing the shape parameter in gamma prior
> #------
>
> predictions <- qsprpred_EG_5k$qspr_predx(smis[testidx])
get fingerprint graph from SMILES strings
Error in fp.to.matrix(fp.obj) : could not find function "fp.to.matrix"
Calls: <Anonymous> -> descriptor
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64
Version: 1.1
Check: examples
Result: ERROR
Running examples in ‘iqspr-Ex.R’ failed
The error most likely occurred in:
> ### Name: QSPRpred-class
> ### Title: QSPRpredictor class
> ### Aliases: QSPRpred-class QSPRpred
>
> ### ** Examples
>
> data(qspr.data)
> smis <- paste(qspr.data[,1])
> ty <- qspr.data[,c(2,5)]
> trainidx <- sample(1:nrow(qspr.data), 5000)
> testidx <- (1:nrow(qspr.data))[-trainidx][1:100]
>
> data(qsprpred_EG_5k)
> ## same as run => qsprpred_EG_5k <-
>
> #-----arguments
> #smis: SMILES string set (character vector) for training
> #y: property sets (matrix) for training
> #v_ymin: minimum value of target properties
> #v_ymax: maximum value of target properties
> #v_descriptor: function transforming SMILES strings to feature matrix
> #v_fpnames: character vectors indicating finger print used in the descriptor
> #w0: matrix representing prior mean of coeffients in linear regression model
> #V0_inv: matrix representing the prior variance of coeffients in linear regression model
> #a0: numeric value representing the location parameter in gamma prior
> #b0: numeric value representing the shape parameter in gamma prior
> #------
>
> predictions <- qsprpred_EG_5k$qspr_predx(smis[testidx])
get fingerprint graph from SMILES strings
Error in .jcall("org/guha/rcdk/util/Misc", "Ljava/lang/Object;", "getProperty", :
RcallMethod: cannot determine object class
Calls: <Anonymous> ... descriptor -> lapply -> FUN -> get.property -> .jcall
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.1
Check: examples
Result: ERROR
Running examples in 'iqspr-Ex.R' failed
The error most likely occurred in:
> ### Name: QSPRpred-class
> ### Title: QSPRpredictor class
> ### Aliases: QSPRpred-class QSPRpred
>
> ### ** Examples
>
> data(qspr.data)
> smis <- paste(qspr.data[,1])
> ty <- qspr.data[,c(2,5)]
> trainidx <- sample(1:nrow(qspr.data), 5000)
> testidx <- (1:nrow(qspr.data))[-trainidx][1:100]
>
> data(qsprpred_EG_5k)
> ## same as run => qsprpred_EG_5k <-
>
> #-----arguments
> #smis: SMILES string set (character vector) for training
> #y: property sets (matrix) for training
> #v_ymin: minimum value of target properties
> #v_ymax: maximum value of target properties
> #v_descriptor: function transforming SMILES strings to feature matrix
> #v_fpnames: character vectors indicating finger print used in the descriptor
> #w0: matrix representing prior mean of coeffients in linear regression model
> #V0_inv: matrix representing the prior variance of coeffients in linear regression model
> #a0: numeric value representing the location parameter in gamma prior
> #b0: numeric value representing the shape parameter in gamma prior
> #------
>
> predictions <- qsprpred_EG_5k$qspr_predx(smis[testidx])
get fingerprint graph from SMILES strings
Error: could not find function "fp.to.matrix"
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Version: 1.1
Check: examples
Result: ERROR
Running examples in ‘iqspr-Ex.R’ failed
The error most likely occurred in:
> ### Name: QSPRpred-class
> ### Title: QSPRpredictor class
> ### Aliases: QSPRpred-class QSPRpred
>
> ### ** Examples
>
> data(qspr.data)
> smis <- paste(qspr.data[,1])
> ty <- qspr.data[,c(2,5)]
> trainidx <- sample(1:nrow(qspr.data), 5000)
> testidx <- (1:nrow(qspr.data))[-trainidx][1:100]
>
> data(qsprpred_EG_5k)
> ## same as run => qsprpred_EG_5k <-
>
> #-----arguments
> #smis: SMILES string set (character vector) for training
> #y: property sets (matrix) for training
> #v_ymin: minimum value of target properties
> #v_ymax: maximum value of target properties
> #v_descriptor: function transforming SMILES strings to feature matrix
> #v_fpnames: character vectors indicating finger print used in the descriptor
> #w0: matrix representing prior mean of coeffients in linear regression model
> #V0_inv: matrix representing the prior variance of coeffients in linear regression model
> #a0: numeric value representing the location parameter in gamma prior
> #b0: numeric value representing the shape parameter in gamma prior
> #------
>
> predictions <- qsprpred_EG_5k$qspr_predx(smis[testidx])
get fingerprint graph from SMILES strings
Error in .jcall("org/openscience/cdk/DefaultChemObjectBuilder", "Lorg/openscience/cdk/interfaces/IChemObjectBuilder;", :
RcallMethod: cannot determine object class
Calls: <Anonymous> ... get.smiles.parser -> .get.chem.object.builder -> .jcall -> .External
Execution halted
Flavor: r-oldrel-osx-x86_64