Last updated on 2017-07-31 01:47:28.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.3 | 0.76 | 36.31 | 37.07 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.2.3 | 0.78 | 28.68 | 29.46 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.2.3 | 53.36 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.3 | 50.74 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.2.3 | 6.00 | 73.00 | 79.00 | NOTE | |
| r-patched-linux-x86_64 | 1.2.3 | 0.81 | 34.81 | 35.62 | NOTE | |
| r-patched-solaris-x86 | 1.2.3 | 65.00 | NOTE | |||
| r-release-linux-x86_64 | 1.2.3 | 0.81 | 34.70 | 35.50 | NOTE | |
| r-release-windows-ix86+x86_64 | 1.2.3 | 4.00 | 68.00 | 72.00 | NOTE | |
| r-release-osx-x86_64 | 1.2.3 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 1.2.3 | 4.00 | 46.00 | 50.00 | NOTE | |
| r-oldrel-osx-x86_64 | 1.2.3 | NOTE |
Version: 1.2.3
Check: DESCRIPTION meta-information
Result: NOTE
Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.2.3
Check: dependencies in R code
Result: NOTE
'library' or 'require' calls to packages already attached by Depends:
‘MASS’ ‘amap’ ‘gplots’ ‘impute’
Please remove these calls from your code.
Packages in Depends field not imported from:
‘MASS’ ‘amap’ ‘gplots’ ‘impute’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.2.3
Check: R code for possible problems
Result: NOTE
adjust.linearmodel: no visible global function definition for ‘lm’
adjust.linearmodel: no visible global function definition for ‘rlm’
combat : aprior: no visible global function definition for ‘var’
combat : bprior: no visible global function definition for ‘var’
combat : L: no visible global function definition for ‘dnorm’
combat: no visible binding for global variable ‘var’
combat: no visible global function definition for ‘par’
combat: no visible global function definition for ‘density’
combat: no visible global function definition for ‘plot’
combat: no visible global function definition for ‘lines’
combat: no visible global function definition for ‘dnorm’
combat: no visible global function definition for ‘qqnorm’
combat: no visible global function definition for ‘qqline’
combat: no visible global function definition for ‘rgamma’
combat: no visible global function definition for ‘qqplot’
combat: no visible global function definition for ‘title’
confounding: no visible global function definition for ‘heat.colors’
confounding: no visible global function definition for ‘fisher.test’
confounding: no visible global function definition for ‘chisq.test’
confounding: no visible global function definition for ‘lm’
confounding: no visible global function definition for ‘pf’
confounding: no visible global function definition for ‘heatmap.2’
corrected.p: no visible global function definition for ‘p.adjust’
dense.plot: no visible global function definition for ‘density’
dense.plot: no visible global function definition for ‘plot’
dense.plot: no visible global function definition for ‘lines’
feature.assoc: no visible binding for global variable ‘cor’
feature.assoc : <anonymous>: no visible global function definition for
‘cor.test’
feature.assoc: no visible global function definition for ‘t.test’
feature.assoc: no visible global function definition for ‘wilcox.test’
feature.assoc: no visible global function definition for ‘na.omit’
feature.assoc: no visible global function definition for ‘lm’
feature.assoc: no visible global function definition for ‘pf’
hca.plot: no visible global function definition for ‘palette’
hca.plot: no visible global function definition for ‘colorpanel’
hca.plot: no visible global function definition for ‘hcluster’
hca.plot: no visible global function definition for ‘as.dendrogram’
hca.plot: no visible global function definition for ‘par’
hca.plot: no visible global function definition for ‘layout’
hca.plot: no visible global function definition for ‘plot’
hca.plot: no visible global function definition for ‘rect’
hca.plot: no visible global function definition for ‘axis’
hca.test: no visible global function definition for ‘hcluster’
hca.test: no visible global function definition for ‘cutree’
hca.test: no visible global function definition for ‘fisher.test’
hca.test: no visible global function definition for ‘chisq.test’
hca.test: no visible global function definition for ‘lm’
hca.test: no visible global function definition for ‘pf’
kill.pc: no visible global function definition for ‘impute.knn’
prince: no visible global function definition for ‘impute.knn’
prince: no visible global function definition for ‘prcomp’
prince: no visible global function definition for ‘lm’
prince: no visible global function definition for ‘pf’
prince.plot: no visible global function definition for ‘heat.colors’
prince.plot: no visible global function definition for ‘heatmap.2’
prince.var.plot: no visible global function definition for ‘impute.knn’
prince.var.plot: no visible global function definition for ‘prcomp’
prince.var.plot: no visible binding for global variable ‘median’
prince.var.plot: no visible global function definition for ‘plot’
prince.var.plot: no visible global function definition for ‘points’
prince.var.plot: no visible global function definition for ‘legend’
quickadjust.ref: no visible binding for global variable ‘median’
quickadjust.ref: no visible global function definition for ‘median’
quickadjust.zero: no visible binding for global variable ‘median’
Undefined global functions or variables:
as.dendrogram axis chisq.test colorpanel cor cor.test cutree density
dnorm fisher.test hcluster heat.colors heatmap.2 impute.knn layout
legend lines lm median na.omit p.adjust palette par pf plot points
prcomp qqline qqnorm qqplot rect rgamma rlm t.test title var
wilcox.test
Consider adding
importFrom("grDevices", "heat.colors", "palette")
importFrom("graphics", "axis", "layout", "legend", "lines", "par",
"plot", "points", "rect", "title")
importFrom("stats", "as.dendrogram", "chisq.test", "cor", "cor.test",
"cutree", "density", "dnorm", "fisher.test", "lm", "median",
"na.omit", "p.adjust", "pf", "prcomp", "qqline", "qqnorm",
"qqplot", "rgamma", "t.test", "var", "wilcox.test")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.2.3
Check: Rd line widths
Result: NOTE
Rd file 'prince.plot.Rd':
\examples lines wider than 100 characters:
## patient annotations as a data.frame, annotations should be numbers and factors but not characters.
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.2.3
Check: package dependencies
Result: ERROR
Package required but not available: ‘impute’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-osx-x86_64