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AmyloGram

Predict amyloid proteins

AmyloGram predicts presence of signal peptides in eukaryotic proteins using hidden semi-Markov models. The implemented algorithm can be accessed as a web-based service www.smorfland.uni.wroc.pl/AmyloGram

Local instance of AmyloGram

AmyloGram can be also used locally as the R package. It can be installed from CRAN using:

install.packages("AmyloGram")

You can install the latest development version of the code using the devtools R package.

# Install devtools, if you haven't already.
install.packages("devtools")

library(devtools)
install_github("michbur/AmyloGram")

After installation GUI can be accessed locally:

library(AmyloGram)
AmyloGram_gui()

Predictions might be also made in the batch mode:

data(AmyloGram_model)
data(pep424)
predict(AmyloGram_model, pep424[1L:20])