Functions for analyzing high throughput sequencing stable isotope probing (HTS-SIP) data. Analyses include high resolution stable isotope probing (HR-SIP), multi-window high resolution stable isotope probing (MW-HR-SIP), and quantitative stable isotope probing (q-SIP).
| Version: | 1.2.0 |
| Depends: | R (≥ 3.1.2) |
| Imports: | ape (≥ 4.1), magrittr (≥ 1.5), stringr (≥ 1.0.0), plyr (≥ 1.8.4), dplyr (≥ 0.5.0), tidyr (≥ 0.5.1), ggplot2 (≥ 2.1.0), DESeq2 (≥ 1.10.1), phyloseq (≥ 1.14.0), coenocliner (≥ 0.2.2), lazyeval (≥ 0.2.0) |
| Suggests: | testthat, knitr, rmarkdown, doParallel |
| Published: | 2017-07-24 |
| Author: | Nicholas Youngblut [aut, cre], Samuel Barnett [ctb] |
| Maintainer: | Nicholas Youngblut <nyoungb2 at gmail.com> |
| License: | GPL-2 | file LICENSE |
| NeedsCompilation: | no |
| Citation: | HTSSIP citation info |
| Materials: | README NEWS |
| CRAN checks: | HTSSIP results |
| Reference manual: | HTSSIP.pdf |
| Vignettes: |
BD shifts BD shifts HTS-SIP data simulation MW-HR-SIP Beta diversity ordinations q-SIP Quantifying isotope incorporation |
| Package source: | HTSSIP_1.2.0.tar.gz |
| Windows binaries: | r-devel: HTSSIP_1.2.0.zip, r-release: HTSSIP_1.2.0.zip, r-oldrel: HTSSIP_1.2.0.zip |
| OS X El Capitan binaries: | r-release: not available |
| OS X Mavericks binaries: | r-oldrel: HTSSIP_1.2.0.tgz |
| Old sources: | HTSSIP archive |
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