SNPassoc: SNPs-based whole genome association studies

This package carries out most common analysis when performing whole genome association studies. These analyses include descriptive statistics and exploratory analysis of missing values, calculation of Hardy-Weinberg equilibrium, analysis of association based on generalized linear models (either for quantitative or binary traits), and analysis of multiple SNPs (haplotype and epistasis analysis). Permutation test and related tests (sum statistic and truncated product) are also implemented. Max-statistic and genetic risk-allele score exact distributions are also possible to be estimated.

Version: 1.9-2
Depends: R (≥ 3.0.0), haplo.stats, survival, mvtnorm, parallel
Published: 2014-04-23
Author: Juan R González, Lluís Armengol, Elisabet Guinó, Xavier Solé, and Víctor Moreno
Maintainer: Juan R González <jrgonzalez at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: SNPassoc results


Reference manual: SNPassoc.pdf
Package source: SNPassoc_1.9-2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X El Capitan binaries: r-release: SNPassoc_1.9-2.tgz
OS X Mavericks binaries: r-oldrel: SNPassoc_1.9-2.tgz
Old sources: SNPassoc archive

Reverse dependencies:

Reverse depends: compareGroups
Reverse imports: dartR


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