Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to downloads NCBI data dumps and create a local database for fast and local taxonomic assignment.
| Version: | 0.2.2 |
| Depends: | R (≥ 3.0.0) |
| Imports: | parallel, RSQLite, data.table, R.utils |
| Suggests: | testthat, knitr, rmarkdown |
| Published: | 2017-03-09 |
| Author: | Scott Sherrill-Mix [aut, cre] |
| Maintainer: | Scott Sherrill-Mix <shescott at upenn.edu> |
| License: | GPL-2 |
| NeedsCompilation: | yes |
| Materials: | README |
| CRAN checks: | taxonomizr results |
| Reference manual: | taxonomizr.pdf |
| Vignettes: |
taxonomizr usage |
| Package source: | taxonomizr_0.2.2.tar.gz |
| Windows binaries: | r-devel: taxonomizr_0.2.2.zip, r-release: taxonomizr_0.2.2.zip, r-oldrel: taxonomizr_0.2.2.zip |
| OS X El Capitan binaries: | r-release: taxonomizr_0.2.2.tgz |
| OS X Mavericks binaries: | r-oldrel: taxonomizr_0.2.2.tgz |
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