Last updated on 2017-09-26 01:47:47.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.2.4 | 3.88 | 61.48 | 65.36 | OK | --install=fake |
| r-devel-linux-x86_64-debian-gcc | 2.2.4 | 4.06 | 62.25 | 66.30 | OK | --install=fake |
| r-devel-linux-x86_64-fedora-clang | 2.2.4 | 148.79 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.2.4 | 147.76 | OK | |||
| r-devel-windows-ix86+x86_64 | 2.2.4 | 11.00 | 107.00 | 118.00 | OK | |
| r-patched-linux-x86_64 | 2.2.4 | 4.06 | 63.16 | 67.22 | OK | --install=fake |
| r-release-linux-x86_64 | 2.2.4 | 3.89 | 65.71 | 69.60 | OK | --install=fake |
| r-release-windows-ix86+x86_64 | 2.2.4 | 11.00 | 104.00 | 115.00 | OK | |
| r-release-osx-x86_64 | 2.2.4 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 2.2.4 | 14.00 | 107.00 | 121.00 | OK | |
| r-oldrel-osx-x86_64 | 2.2.4 | ERROR |
Version: 2.2.4
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Warning: Software mark not found in path.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 2.2.4
Check: examples
Result: ERROR
Running examples in ‘RMark-Ex.R’ failed
The error most likely occurred in:
> ### Name: Blackduck
> ### Title: Black duck known fate data
> ### Aliases: Blackduck
> ### Keywords: datasets
>
> ### ** Examples
>
>
> data(Blackduck)
> # Change BirdAge to numeric; starting with version 1.6.3 factor variables are
> # no longer allowed. They can work as in this example but they can be misleading
> # and fail if the levels are non-numeric. The real parameters will remain
> # unchanged but the betas will be different.
> Blackduck$BirdAge=as.numeric(Blackduck$BirdAge)-1
> run.Blackduck=function()
+ {
+ #
+ # Process data
+ #
+ bduck.processed=process.data(Blackduck,model="Known")
+ #
+ # Create default design data
+ #
+ bduck.ddl=make.design.data(bduck.processed)
+ #
+ # Add occasion specific data min < 0; I have no idea what it is
+ #
+ bduck.ddl$S$min=c(4,6,7,7,7,6,5,5)
+ #
+ # Define range of models for S
+ #
+ S.dot=list(formula=~1)
+ S.time=list(formula=~time)
+ S.min=list(formula=~min)
+ S.BirdAge=list(formula=~BirdAge)
+ #
+ # Note that in the following model in the MARK example, the covariates
+ # have been standardized. That means that the beta parameters will be different
+ # for BirdAge, Weight and their interaction but the likelihood and real parameter
+ # estimates are the same.
+ #
+ S.BirdAgexWeight.min=list(formula=~min+BirdAge*Weight)
+ S.BirdAge.Weight=list(formula=~BirdAge+Weight)
+ #
+ # Create model list and run assortment of models
+ #
+ model.list=create.model.list("Known")
+ bduck.results=mark.wrapper(model.list,data=bduck.processed,ddl=bduck.ddl,
+ invisible=FALSE,threads=1)
+
+ #
+ # Return model table and list of models
+ #
+ return(bduck.results)
+ }
> bduck.results=run.Blackduck()
S.BirdAge
sh: mark: command not found
Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
Output file does not exist. Unable to find or run mark.exe
S.BirdAge.Weight
sh: mark: command not found
Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
Output file does not exist. Unable to find or run mark.exe
S.BirdAgexWeight.min
sh: mark: command not found
Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
Output file does not exist. Unable to find or run mark.exe
S.dot
sh: mark: command not found
Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
Output file does not exist. Unable to find or run mark.exe
S.min
sh: mark: command not found
Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
Output file does not exist. Unable to find or run mark.exe
S.time
sh: mark: command not found
Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
Output file does not exist. Unable to find or run mark.exe
No mark models found
Error in collect.models() :
Calls: run.Blackduck -> mark.wrapper -> collect.models
Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64