CRAN Package Check Results for Package lme4

Last updated on 2017-09-26 01:47:25.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-13 71.81 271.69 343.50 ERROR
r-devel-linux-x86_64-debian-gcc 1.1-13 56.33 266.51 322.84 ERROR
r-devel-linux-x86_64-fedora-clang 1.1-13 1096.61 ERROR
r-devel-linux-x86_64-fedora-gcc 1.1-13 1160.53 ERROR
r-devel-windows-ix86+x86_64 1.1-13 149.00 1407.00 1556.00 ERROR
r-patched-linux-x86_64 1.1-13 57.14 526.35 583.49 OK
r-patched-solaris-x86 1.1-13 1339.30 NOTE
r-release-linux-x86_64 1.1-13 55.45 515.96 571.40 OK
r-release-windows-ix86+x86_64 1.1-13 154.00 1323.00 1477.00 NOTE
r-release-osx-x86_64 1.1-13 NOTE
r-oldrel-windows-ix86+x86_64 1.1-13 180.00 1309.00 1489.00 NOTE
r-oldrel-osx-x86_64 1.1-13 NOTE

Check Details

Version: 1.1-13
Check: tests
Result: ERROR
     Running ‘AAAtest-all.R’ [114s/114s]
    Running the tests in ‘tests/AAAtest-all.R’ failed.
    Complete output:
     > if(require("testthat", quietly = TRUE)) {
     + pkg <- "lme4"
     + require(pkg, character.only=TRUE, quietly=TRUE)
     + test_check(pkg)
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + cat( "package 'testthat' not available, cannot run unit tests\n" )
     + }
     1. Failure: lmer (@test-methods.R#70) ------------------------------------------
     do.call(anova, list(fm0, fm1)) showed 0 warnings
    
    
     testthat results ================================================================
     OK: 707 SKIPPED: 0 FAILED: 1
     1. Failure: lmer (@test-methods.R#70)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.1-13
Check: tests
Result: ERROR
     Running ‘AAAtest-all.R’ [116s/116s]
    Running the tests in ‘tests/AAAtest-all.R’ failed.
    Complete output:
     > if(require("testthat", quietly = TRUE)) {
     + pkg <- "lme4"
     + require(pkg, character.only=TRUE, quietly=TRUE)
     + test_check(pkg)
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + cat( "package 'testthat' not available, cannot run unit tests\n" )
     + }
     1. Failure: lmer (@test-methods.R#70) ------------------------------------------
     do.call(anova, list(fm0, fm1)) showed 0 warnings
    
    
     testthat results ================================================================
     OK: 707 SKIPPED: 0 FAILED: 1
     1. Failure: lmer (@test-methods.R#70)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1-13
Check: installed package size
Result: NOTE
     installed size is 27.0Mb
     sub-directories of 1Mb or more:
     doc 1.5Mb
     libs 21.9Mb
     testdata 1.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.1-13
Check: tests
Result: ERROR
     Running ‘AAAtest-all.R’ [203s/206s]
     Running ‘HSAURtrees.R’
     Running ‘REMLdev.R’
     Running ‘ST.R’
     Running ‘agridat_gotway.R’
     Running ‘bootMer.R’ [13s/20s]
     Running ‘boundary.R’ [18s/18s]
     Running ‘condVar.R’
     Running ‘confint.R’
     Running ‘devCritFun.R’
     Running ‘devfunQ.R’
     Running ‘drop.R’
     Running ‘drop1contrasts.R’
     Running ‘dynload.R’
     Running ‘elston.R’
     Running ‘evalCall.R’
     Running ‘extras.R’
     Running ‘falsezero_dorie.R’
     Running ‘fewlevels.R’ [18s/18s]
     Running ‘getME.R’
     Running ‘glmer-1.R’
     Running ‘glmerControlPass.R’ [15s/15s]
     Running ‘glmerWarn.R’
     Running ‘glmmExt.R’ [15s/15s]
     Running ‘glmmWeights.R’ [13s/13s]
     Running ‘hatvalues.R’
     Running ‘is.R’
     Running ‘lmList-tst.R’
     Running ‘lme4_nlme.R’
     Running ‘lmer-0.R’
     Running ‘lmer-1.R’
     Comparing ‘lmer-1.Rout’ to ‘lmer-1.Rout.save’ ... OK
     Running ‘lmer-conv.R’
     Running ‘lmer2_ex.R’
     Running ‘methods.R’
     Running ‘minval.R’
     Running ‘modFormula.R’
     Running ‘nbinom.R’
     Running ‘nlmer-conv.R’
     Running ‘nlmer.R’
     Comparing ‘nlmer.Rout’ to ‘nlmer.Rout.save’ ... OK
     Running ‘offset.R’
     Running ‘optimizer.R’ [11s/11s]
     Running ‘polytomous.R’
     Running ‘prLogistic.R’
     Running ‘predict.R’
     Running ‘predict_basis.R’
     Running ‘predsim.R’
     Running ‘priorWeights.R’ [14s/14s]
     Running ‘priorWeightsModComp.R’
     Running ‘profile-tst.R’ [47s/69s]
     Running ‘refit.R’ [31s/32s]
     Running ‘resids.R’
     Running ‘respiratory.R’ [15s/16s]
     Running ‘simulate.R’ [12s/13s]
     Running ‘testOptControl.R’
     Running ‘test_times.R’
     Running ‘testcolonizer.R’
     Running ‘testcrab.R’ [17s/18s]
     Running ‘throw.R’ [11s/12s]
     Running ‘utils.R’
     Running ‘varcorr.R’
     Running ‘vcov-etc.R’
    Running the tests in ‘tests/AAAtest-all.R’ failed.
    Complete output:
     > if(require("testthat", quietly = TRUE)) {
     + pkg <- "lme4"
     + require(pkg, character.only=TRUE, quietly=TRUE)
     + test_check(pkg)
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + cat( "package 'testthat' not available, cannot run unit tests\n" )
     + }
     1. Failure: lmer (@test-methods.R#70) ------------------------------------------
     do.call(anova, list(fm0, fm1)) showed 0 warnings
    
    
     testthat results ================================================================
     OK: 707 SKIPPED: 0 FAILED: 1
     1. Failure: lmer (@test-methods.R#70)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.1-13
Check: tests
Result: ERROR
     Running ‘AAAtest-all.R’ [223s/280s]
     Running ‘HSAURtrees.R’
     Running ‘REMLdev.R’
     Running ‘ST.R’
     Running ‘agridat_gotway.R’ [8s/10s]
     Running ‘bootMer.R’ [13s/30s]
     Running ‘boundary.R’ [19s/27s]
     Running ‘condVar.R’
     Running ‘confint.R’ [9s/11s]
     Running ‘devCritFun.R’
     Running ‘devfunQ.R’ [6s/10s]
     Running ‘drop.R’ [7s/20s]
     Running ‘drop1contrasts.R’ [7s/17s]
     Running ‘dynload.R’
     Running ‘elston.R’ [6s/16s]
     Running ‘evalCall.R’ [6s/12s]
     Running ‘extras.R’
     Running ‘falsezero_dorie.R’
     Running ‘fewlevels.R’ [21s/38s]
     Running ‘getME.R’ [7s/12s]
     Running ‘glmer-1.R’ [9s/16s]
     Running ‘glmerControlPass.R’ [15s/25s]
     Running ‘glmerWarn.R’ [7s/10s]
     Running ‘glmmExt.R’ [16s/27s]
     Running ‘glmmWeights.R’ [13s/22s]
     Running ‘hatvalues.R’
     Running ‘is.R’
     Running ‘lmList-tst.R’ [9s/13s]
     Running ‘lme4_nlme.R’
     Running ‘lmer-0.R’ [7s/11s]
     Running ‘lmer-1.R’ [11s/16s]
     Comparing ‘lmer-1.Rout’ to ‘lmer-1.Rout.save’ ... OK
     Running ‘lmer-conv.R’
     Running ‘lmer2_ex.R’
     Running ‘methods.R’
     Running ‘minval.R’
     Running ‘modFormula.R’ [7s/10s]
     Running ‘nbinom.R’
     Running ‘nlmer-conv.R’
     Running ‘nlmer.R’
     Comparing ‘nlmer.Rout’ to ‘nlmer.Rout.save’ ... OK
     Running ‘offset.R’ [8s/10s]
     Running ‘optimizer.R’ [11s/15s]
     Running ‘polytomous.R’
     Running ‘prLogistic.R’
     Running ‘predict.R’
     Running ‘predict_basis.R’
     Running ‘predsim.R’
     Running ‘priorWeights.R’ [15s/18s]
     Running ‘priorWeightsModComp.R’
     Running ‘profile-tst.R’ [53s/99s]
     Running ‘refit.R’ [33s/40s]
     Running ‘resids.R’
     Running ‘respiratory.R’ [15s/16s]
     Running ‘simulate.R’ [10s/13s]
     Running ‘testOptControl.R’
     Running ‘test_times.R’
     Running ‘testcolonizer.R’
     Running ‘testcrab.R’ [16s/20s]
     Running ‘throw.R’ [11s/13s]
     Running ‘utils.R’
     Running ‘varcorr.R’
     Running ‘vcov-etc.R’
    Running the tests in ‘tests/AAAtest-all.R’ failed.
    Complete output:
     > if(require("testthat", quietly = TRUE)) {
     + pkg <- "lme4"
     + require(pkg, character.only=TRUE, quietly=TRUE)
     + test_check(pkg)
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + cat( "package 'testthat' not available, cannot run unit tests\n" )
     + }
     1. Failure: lmer (@test-methods.R#70) ------------------------------------------
     do.call(anova, list(fm0, fm1)) showed 0 warnings
    
    
     testthat results ================================================================
     OK: 707 SKIPPED: 0 FAILED: 1
     1. Failure: lmer (@test-methods.R#70)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.1-13
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'AAAtest-all.R' [175s]
     Running 'HSAURtrees.R' [3s]
     Running 'REMLdev.R' [4s]
     Running 'ST.R' [3s]
     Running 'agridat_gotway.R' [6s]
     Running 'bootMer.R' [15s]
     Running 'boundary.R' [12s]
     Running 'condVar.R' [4s]
     Running 'confint.R' [5s]
     Running 'devCritFun.R' [4s]
     Running 'devfunQ.R' [5s]
     Running 'drop.R' [4s]
     Running 'drop1contrasts.R' [3s]
     Running 'dynload.R' [0s]
     Running 'elston.R' [4s]
     Running 'evalCall.R' [4s]
     Running 'extras.R' [2s]
     Running 'falsezero_dorie.R' [2s]
     Running 'fewlevels.R' [18s]
     Running 'getME.R' [3s]
     Running 'glmer-1.R' [6s]
     Running 'glmerControlPass.R' [15s]
     Running 'glmerWarn.R' [4s]
     Running 'glmmExt.R' [13s]
     Running 'glmmWeights.R' [11s]
     Running 'hatvalues.R' [4s]
     Running 'is.R' [6s]
     Running 'lmList-tst.R' [5s]
     Running 'lme4_nlme.R' [3s]
     Running 'lmer-0.R' [5s]
     Running 'lmer-1.R' [6s]
     Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ... OK
     Running 'lmer-conv.R' [3s]
     Running 'lmer2_ex.R' [3s]
     Running 'methods.R' [3s]
     Running 'minval.R' [2s]
     Running 'modFormula.R' [4s]
     Running 'nbinom.R' [3s]
     Running 'nlmer-conv.R' [2s]
     Running 'nlmer.R' [3s]
     Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ... OK
     Running 'offset.R' [4s]
     Running 'optimizer.R' [6s]
     Running 'polytomous.R' [3s]
     Running 'prLogistic.R' [3s]
     Running 'predict.R' [4s]
     Running 'predict_basis.R' [4s]
     Running 'predsim.R' [5s]
     Running 'priorWeights.R' [9s]
     Running 'priorWeightsModComp.R' [4s]
     Running 'profile-tst.R' [43s]
     Running 'refit.R' [29s]
     Running 'resids.R' [3s]
     Running 'respiratory.R' [13s]
     Running 'simulate.R' [8s]
     Running 'testOptControl.R' [2s]
     Running 'test_times.R' [2s]
     Running 'testcolonizer.R' [4s]
     Running 'testcrab.R' [11s]
     Running 'throw.R' [7s]
     Running 'utils.R' [0s]
     Running 'varcorr.R' [5s]
     Running 'vcov-etc.R' [4s]
    Running the tests in 'tests/AAAtest-all.R' failed.
    Last 13 lines of output:
     [1] 0.543 - 0.543 == 2.33e-06
     [2] 6.429 - 6.429 == -2.40e-05
    
    
     2. Failure: lmer (@test-methods.R#70) ------------------------------------------
     do.call(anova, list(fm0, fm1)) showed 0 warnings
    
    
     testthat results ================================================================
     OK: 703 SKIPPED: 0 FAILED: 2
     1. Failure: glmer (@test-glmer.R#141)
     2. Failure: lmer (@test-methods.R#70)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.1-13
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'AAAtest-all.R' [175s]
     Running 'HSAURtrees.R' [4s]
     Running 'REMLdev.R' [4s]
     Running 'ST.R' [3s]
     Running 'agridat_gotway.R' [6s]
     Running 'bootMer.R' [13s]
     Running 'boundary.R' [14s]
     Running 'condVar.R' [4s]
     Running 'confint.R' [6s]
     Running 'devCritFun.R' [3s]
     Running 'devfunQ.R' [4s]
     Running 'drop.R' [5s]
     Running 'drop1contrasts.R' [5s]
     Running 'dynload.R' [0s]
     Running 'elston.R' [5s]
     Running 'evalCall.R' [4s]
     Running 'extras.R' [2s]
     Running 'falsezero_dorie.R' [3s]
     Running 'fewlevels.R' [14s]
     Running 'getME.R' [4s]
     Running 'glmer-1.R' [6s]
     Running 'glmerControlPass.R' [15s]
     Running 'glmerWarn.R' [4s]
     Running 'glmmExt.R' [12s]
     Running 'glmmWeights.R' [11s]
     Running 'hatvalues.R' [4s]
     Running 'is.R' [4s]
     Running 'lmList-tst.R' [7s]
     Running 'lme4_nlme.R' [4s]
     Running 'lmer-0.R' [5s]
     Running 'lmer-1.R' [7s]
     Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ... OK
     Running 'lmer-conv.R' [3s]
     Running 'lmer2_ex.R' [3s]
     Running 'methods.R' [4s]
     Running 'minval.R' [3s]
     Running 'modFormula.R' [6s]
     Running 'nbinom.R' [3s]
     Running 'nlmer-conv.R' [3s]
     Running 'nlmer.R' [3s]
     Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ... OK
     Running 'offset.R' [7s]
     Running 'optimizer.R' [8s]
     Running 'polytomous.R' [3s]
     Running 'prLogistic.R' [3s]
     Running 'predict.R' [5s]
     Running 'predict_basis.R' [5s]
     Running 'predsim.R' [6s]
     Running 'priorWeights.R' [10s]
     Running 'priorWeightsModComp.R' [5s]
     Running 'profile-tst.R' [43s]
     Running 'refit.R' [28s]
     Running 'resids.R' [4s]
     Running 'respiratory.R' [11s]
     Running 'simulate.R' [8s]
     Running 'testOptControl.R' [3s]
     Running 'test_times.R' [2s]
     Running 'testcolonizer.R' [5s]
     Running 'testcrab.R' [12s]
     Running 'throw.R' [8s]
     Running 'utils.R' [0s]
     Running 'varcorr.R' [6s]
     Running 'vcov-etc.R' [5s]
    Running the tests in 'tests/AAAtest-all.R' failed.
    Last 13 lines of output:
     + test_check(pkg)
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + cat( "package 'testthat' not available, cannot run unit tests\n" )
     + }
     1. Failure: lmer (@test-methods.R#70) ------------------------------------------
     do.call(anova, list(fm0, fm1)) showed 0 warnings
    
    
     testthat results ================================================================
     OK: 704 SKIPPED: 0 FAILED: 1
     1. Failure: lmer (@test-methods.R#70)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.1-13
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
     input string 785 is invalid in this locale
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'lmer.tex' failed.
    LaTeX errors:
    ! Undefined control sequence.
    l.15 x<9c><ed>\Mh
     ^^TK^^P<ae><97>(q$<ee>؈!.L6^^L/($oYX^^Hx^^H<eb>!<a0>'o<de><<eb>ٓ^^A/<a2>O<f0>]ċ^^G<f5>^^]<84><e7>A...
    The control sequence at the end of the top line
    of your error message was never \def'ed. If you have
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Missing $ inserted.
    <inserted text>
     $
    l.16 ...F<a0><ba>v<ed>Zggg<ad>V{<fd><fa>5^^Q9<8e>388866<a6><94><8a><e3>^^X<fd>^^]<c7><c1><83><ae>^
     <bd><9a>J<a5>l<db>v^^\^^G<9f>J<a9><87>^^O^^_<c6>q|...
    ! Extra }, or forgotten $.
    l.17 Ԓ<da>[}
     <b8>ӄ<f6><a0><9c>0^^L<89>(<9b><cd><e2>^^A<98><ce>0^^L<0b><85>^^BOm<b9>\^^^^^Z^^Z<8a><a2><88><a7>?<9b><cd>"@a<ce>0<8e>eYP{<a1>P<c0>O<<c8><e3>...
    I've deleted a group-closing
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-oldrel-osx-x86_64