Performs network enrichment analysis against functional gene sets. Benchmarks networks. Renders raw gene profile matrices of dimensionality 'Ngenes x Nsamples' into the space of gene set (typically pathway) enrichment scores of dimensionality 'Npathways x Nsamples'.
| Version: | 1.4 |
| Depends: | R (≥ 3.0.0) |
| Imports: | parallel, RColorBrewer, ROCR, stats, MASS |
| Suggests: | knitr, rmarkdown, data.table |
| Published: | 2016-12-05 |
| Author: | Andrey Alexeyenko [aut, cph, ths], Ashwini Jeggari [aut, cre] |
| Maintainer: | Ashwini Jeggari <ashwinipriya.jeggari at ki.se> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| CRAN checks: | NEArender results |
| Reference manual: | NEArender.pdf |
| Vignettes: |
NEArender R-package |
| Package source: | NEArender_1.4.tar.gz |
| Windows binaries: | r-devel: NEArender_1.4.zip, r-release: NEArender_1.4.zip, r-oldrel: NEArender_1.4.zip |
| OS X El Capitan binaries: | r-release: NEArender_1.4.tgz |
| OS X Mavericks binaries: | r-oldrel: NEArender_1.4.tgz |
| Old sources: | NEArender archive |
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