The gap encodes the distance between clusters and improves interpretation of cluster heatmaps. The gaps can be of the same distance based on a height threshold to cut the dendrogram. Another option is to vary the size of gaps based on the distance between clusters.
| Version: | 0.0.4 |
| Depends: | R (≥ 2.10), ggplot2, reshape2 |
| Imports: | grid |
| Suggests: | knitr, dendsort, RColorBrewer |
| Published: | 2016-12-05 |
| Author: | Ryo Sakai |
| Maintainer: | Ryo Sakai <ryo at vda-lab.be> |
| License: | GPL-2 | GPL-3 |
| URL: | https://bitbucket.org/vda-lab/gapmap |
| NeedsCompilation: | no |
| CRAN checks: | gapmap results |
| Reference manual: | gapmap.pdf |
| Vignettes: |
An Introduction to the gapmap package An example with a TCGA dataset |
| Package source: | gapmap_0.0.4.tar.gz |
| Windows binaries: | r-devel: gapmap_0.0.4.zip, r-release: gapmap_0.0.4.zip, r-oldrel: gapmap_0.0.4.zip |
| OS X El Capitan binaries: | r-release: gapmap_0.0.4.tgz |
| OS X Mavericks binaries: | r-oldrel: gapmap_0.0.4.tgz |
| Old sources: | gapmap archive |
| Reverse suggests: | dendsort |
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