CRAN Package Check Results for Package HTSSIP

Last updated on 2017-12-20 00:46:56 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3.0 7.22 508.64 515.86 OK --no-vignettes
r-devel-linux-x86_64-debian-gcc 1.3.0 OK --no-vignettes
r-devel-linux-x86_64-fedora-clang 1.3.0 4361.87 NOTE
r-devel-linux-x86_64-fedora-gcc 1.3.0 4608.05 NOTE
r-devel-windows-ix86+x86_64 1.3.0 12.00 408.00 420.00 ERROR --no-vignettes
r-patched-linux-x86_64 1.3.0 8.12 188.51 196.63 OK --no-vignettes
r-patched-solaris-x86 1.3.0 1180.20 NOTE
r-release-linux-x86_64 1.3.0 7.71 183.65 191.36 OK --no-vignettes
r-release-windows-ix86+x86_64 1.3.0 12.00 229.00 241.00 ERROR --no-vignettes
r-release-osx-x86_64 1.3.0 ERROR
r-oldrel-windows-ix86+x86_64 1.3.0 20.00 217.00 237.00 ERROR --no-vignettes
r-oldrel-osx-x86_64 1.3.0 ERROR

Check Details

Version: 1.3.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘igraph’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86

Version: 1.3.0
Flags: --no-vignettes
Check: tests
Result: ERROR
     Running 'testthat.R' [303s]
    Running the tests in 'tests/testthat.R' failed.
    Last 13 lines of output:
     == testthat results ===========================================================
     OK: 57 SKIPPED: 23 FAILED: 11
     1. Error: Beta diversity from a list of phyloseq objects (@test-BD_ordinations.R#2)
     2. Error: Beta diversity from a list of phyloseq objects (parallel) (@test-BD_ordinations.R#9)
     3. Error: phyloseq sim (@test-HTSSIP_sim.R#59)
     4. Error: phyloseq sim w/ metadata (@test-HTSSIP_sim.R#75)
     5. Error: phyloseq sample_data can be converted to dataframe (@test-Util.R#10)
     6. Error: phyloseq tax_table can be converted to dataframe (@test-Util.R#18)
     7. Error: phyloseq otu_table can be converted to dataframe (@test-Util.R#25)
     8. Error: phyloseq-rep sample_data can be converted to dataframe (@test-Util.R#35)
     9. Error: phyloseq otu_table can be converted to dataframe (@test-Util.R#48)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.3.0
Check: installed package size
Result: NOTE
     installed size is 5.1Mb
     sub-directories of 1Mb or more:
     data 4.1Mb
Flavor: r-patched-solaris-x86

Version: 1.3.0
Flags: --no-vignettes
Check: tests
Result: ERROR
     Running 'testthat.R' [84s]
    Running the tests in 'tests/testthat.R' failed.
    Last 13 lines of output:
     == testthat results ===========================================================
     OK: 57 SKIPPED: 23 FAILED: 11
     1. Error: Beta diversity from a list of phyloseq objects (@test-BD_ordinations.R#2)
     2. Error: Beta diversity from a list of phyloseq objects (parallel) (@test-BD_ordinations.R#9)
     3. Error: phyloseq sim (@test-HTSSIP_sim.R#59)
     4. Error: phyloseq sim w/ metadata (@test-HTSSIP_sim.R#75)
     5. Error: phyloseq sample_data can be converted to dataframe (@test-Util.R#10)
     6. Error: phyloseq tax_table can be converted to dataframe (@test-Util.R#18)
     7. Error: phyloseq otu_table can be converted to dataframe (@test-Util.R#25)
     8. Error: phyloseq-rep sample_data can be converted to dataframe (@test-Util.R#35)
     9. Error: phyloseq otu_table can be converted to dataframe (@test-Util.R#48)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 1.3.0
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘DESeq2’ ‘phyloseq’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64

Version: 1.3.0
Flags: --no-vignettes
Check: tests
Result: ERROR
     Running 'testthat.R' [80s]
    Running the tests in 'tests/testthat.R' failed.
    Last 13 lines of output:
     == testthat results ===========================================================
     OK: 57 SKIPPED: 23 FAILED: 11
     1. Error: Beta diversity from a list of phyloseq objects (@test-BD_ordinations.R#2)
     2. Error: Beta diversity from a list of phyloseq objects (parallel) (@test-BD_ordinations.R#9)
     3. Error: phyloseq sim (@test-HTSSIP_sim.R#59)
     4. Error: phyloseq sim w/ metadata (@test-HTSSIP_sim.R#75)
     5. Error: phyloseq sample_data can be converted to dataframe (@test-Util.R#10)
     6. Error: phyloseq tax_table can be converted to dataframe (@test-Util.R#18)
     7. Error: phyloseq otu_table can be converted to dataframe (@test-Util.R#25)
     8. Error: phyloseq-rep sample_data can be converted to dataframe (@test-Util.R#35)
     9. Error: phyloseq otu_table can be converted to dataframe (@test-Util.R#48)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.3.0
Check: package dependencies
Result: ERROR
    Package required and available but unsuitable version: ‘phyloseq’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-oldrel-osx-x86_64