CRAN Package Check Results for Package MAGNAMWAR

Last updated on 2017-12-20 00:46:59 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0.1 4.28 69.58 73.86 OK
r-devel-linux-x86_64-debian-gcc 2.0.1 ERROR
r-devel-linux-x86_64-fedora-clang 2.0.1 103.98 OK
r-devel-linux-x86_64-fedora-gcc 2.0.1 106.72 OK
r-devel-windows-ix86+x86_64 2.0.1 15.00 94.00 109.00 OK
r-patched-linux-x86_64 2.0.1 4.69 87.12 91.81 OK
r-patched-solaris-x86 2.0.1 156.50 OK
r-release-linux-x86_64 2.0.1 3.79 86.48 90.27 OK
r-release-windows-ix86+x86_64 2.0.1 9.00 90.00 99.00 OK
r-release-osx-x86_64 2.0.1 OK
r-oldrel-windows-ix86+x86_64 2.0.1 12.00 110.00 122.00 OK
r-oldrel-osx-x86_64 2.0.1 OK

Check Details

Version: 2.0.1
Check: examples
Result: ERROR
    Running examples in ‘MAGNAMWAR-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: FormatMCLFastas
    > ### Title: Format all raw GenBank fastas to single OrthoMCL compatible
    > ### fasta file
    > ### Aliases: FormatMCLFastas
    >
    > ### ** Examples
    >
    >
    > dir <- system.file('extdata', 'fasta_dir', package='MAGNAMWAR')
    > dir <- paste(dir,'/',sep='')
    > formatted_file <- FormatMCLFastas(dir)
    Warning in file.remove(outfile) :
     cannot remove file '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MAGNAMWAR/extdata/fasta_dir/MCLformatted_all.fasta', reason 'Permission denied'
    Writing out to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MAGNAMWAR/extdata/fasta_dir/MCLformatted_all.fasta
    Warning in file(description = file.out, open = open) :
     cannot open file '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MAGNAMWAR/extdata/fasta_dir/MCLformatted_all.fasta': Permission denied
    Error in file(description = file.out, open = open) :
     cannot open the connection
    Calls: FormatMCLFastas -> <Anonymous> -> file
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc