CRAN Package Check Results for Package RnavGraph

Last updated on 2017-12-20 00:47:14 CET.

Check Details

Version: 0.1.8
Check: R code for possible problems
Result: NOTE
    .isPath: no visible global function definition for ‘tail’
    .isPath: no visible global function definition for ‘head’
    navGraph : <anonymous>: no visible global function definition for
     ‘tail’
    navGraph : <anonymous>: no visible global function definition for ‘sd’
    navGraph: no visible global function definition for ‘colors’
    ng_image_array_gray : <anonymous>: no visible global function
     definition for ‘grey’
    scagGraph: no visible global function definition for ‘quantile’
    closeViz,NG_Viz2DAxis: no visible global function definition for
     ‘dev.off’
    initializeViz,NG_Viz2DAxis: no visible global function definition for
     ‘dev.new’
    initializeViz,NG_Viz2DAxis: no visible global function definition for
     ‘dev.cur’
    plot,NG_graph-ANY: no visible global function definition for ‘box’
    plot,NG_graph-ANY: no visible global function definition for ‘axis’
    plot,NG_graph-ANY: no visible global function definition for ‘points’
    plot,NG_graph-ANY: no visible global function definition for ‘text’
    plot,NG_graph-ANY: no visible global function definition for ‘segments’
    updateViz,NG_Viz2DAxis: no visible global function definition for
     ‘dev.set’
    Undefined global functions or variables:
     axis box colors dev.cur dev.new dev.off dev.set grey head points
     quantile sd segments tail text
    Consider adding
     importFrom("grDevices", "colors", "dev.cur", "dev.new", "dev.off",
     "dev.set", "grey")
     importFrom("graphics", "axis", "box", "points", "segments", "text")
     importFrom("stats", "quantile", "sd")
     importFrom("utils", "head", "tail")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.8
Check: compiled code
Result: NOTE
    File ‘RnavGraph/libs/DisplaystuffTea.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    File ‘RnavGraph/libs/ImgscaleTea.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    File ‘RnavGraph/libs/RnavGraph.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.1.8
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘RDRToolbox’
Flavor: r-release-osx-x86_64

Version: 0.1.8
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Flavor: r-oldrel-osx-x86_64

Version: 0.1.8
Check: dependencies in R code
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
Flavor: r-oldrel-osx-x86_64

Version: 0.1.8
Check: S3 generic/method consistency
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-osx-x86_64

Version: 0.1.8
Check: replacement functions
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    The argument of a replacement function which corresponds to the right
    hand side must be named ‘value’.
Flavor: r-oldrel-osx-x86_64

Version: 0.1.8
Check: foreign function calls
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-osx-x86_64

Version: 0.1.8
Check: R code for possible problems
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key.isPath: no visible global function definition for ‘tail’
    .isPath: no visible global function definition for ‘head’
    navGraph : <anonymous>: no visible global function definition for
     ‘tail’
    navGraph : <anonymous>: no visible global function definition for ‘sd’
    navGraph: no visible global function definition for ‘colors’
    ng_image_array_gray : <anonymous>: no visible global function
     definition for ‘grey’
    scagGraph: no visible global function definition for ‘quantile’
    closeViz,NG_Viz2DAxis: no visible global function definition for
     ‘dev.off’
    initializeViz,NG_Viz2DAxis: no visible global function definition for
     ‘dev.new’
    initializeViz,NG_Viz2DAxis: no visible global function definition for
     ‘dev.cur’
    plot,NG_graph-ANY: no visible global function definition for ‘box’
    plot,NG_graph-ANY: no visible global function definition for ‘axis’
    plot,NG_graph-ANY: no visible global function definition for ‘points’
    plot,NG_graph-ANY: no visible global function definition for ‘text’
    plot,NG_graph-ANY: no visible global function definition for ‘segments’
    updateViz,NG_Viz2DAxis: no visible global function definition for
     ‘dev.set’
    Undefined global functions or variables:
     axis box colors dev.cur dev.new dev.off dev.set grey head points
     quantile sd segments tail text
    Consider adding
     importFrom("grDevices", "colors", "dev.cur", "dev.new", "dev.off",
     "dev.set", "grey")
     importFrom("graphics", "axis", "box", "points", "segments", "text")
     importFrom("stats", "quantile", "sd")
     importFrom("utils", "head", "tail")
    to your NAMESPACE file.
Flavor: r-oldrel-osx-x86_64

Version: 0.1.8
Check: for missing documentation entries
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    All user-level objects in a package should have documentation entries.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-osx-x86_64

Version: 0.1.8
Check: for code/documentation mismatches
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
Flavor: r-oldrel-osx-x86_64

Version: 0.1.8
Check: Rd \usage sections
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-osx-x86_64

Version: 0.1.8
Check: examples
Result: ERROR
    Running examples in ‘RnavGraph-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: ng_get_color
    > ### Title: Extract point coloring from an active navGraph session for a
    > ### particular data set.
    > ### Aliases: ng_get_color
    >
    > ### ** Examples
    >
    > ## Define a NG_data object
    > ng.iris <- ng_data(name = "IrisData", data = iris[,1:4])
    >
    > ## start a navGraph session
    > nav <- navGraph(ng.iris)
    Error in structure(.External(.C_dotTclObjv, objv), class = "tclObj") :
     [tcl] invalid command name "toplevel".
    Calls: navGraph ... tktoplevel -> tkwidget -> tcl -> .Tcl.objv -> structure
    Execution halted
Flavor: r-oldrel-osx-x86_64

Version: 0.1.8
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘RnavGraph.Rnw’
     ...
    > sel <- sample(x = 1:11000, size = 600)
    
    > p.digits <- digits[, sel]
    
    > ng.i.digits <- ng_image_array_gray("USPS Handwritten Digits",
    + p.digits, 16, 16, invert = TRUE, img_in_row = FALSE)
    
     When sourcing ‘RnavGraph.R’:
    Error: [tcl] invalid command name "image".
    Execution halted
Flavor: r-oldrel-osx-x86_64

Version: 0.1.8
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
     get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
     rbind, rownames, sapply, setdiff, sort, table, tapply, union,
     unique, unsplit
    
    Invalid MIT-MAGIC-COOKIE-1 keyWarning in rgl.init(initValue, onlyNULL) :
     RGL: unable to open X11 display
    Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
    
    RnavGraph Version 0.1.8
    Please read the package vignette. Use vignette("RnavGraph").
    
    
    Invalid MIT-MAGIC-COOKIE-1 keyWarning in tclRequire("Img") : Tcl package 'Img' not found
    Can not load the tk Img extension. Hence you can not use the 'ng_image_files' R function. Read the package vignette on how to set up tcl/tk.
    Loading required package: grid
    
    Error: processing vignette 'RnavGraph.Rnw' failed with diagnostics:
     chunk 57
    Error in structure(.External(.C_dotTclObjv, objv), class = "tclObj") :
     [tcl] invalid command name "image".
    
    Execution halted
Flavor: r-oldrel-osx-x86_64