CRAN Package Check Results for Package gap

Last updated on 2017-12-20 00:46:52 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-20 10.62 80.50 91.12 OK
r-devel-linux-x86_64-debian-gcc 1.1-20 ERROR
r-devel-linux-x86_64-fedora-clang 1.1-20 124.67 OK
r-devel-linux-x86_64-fedora-gcc 1.1-20 121.85 OK
r-devel-windows-ix86+x86_64 1.1-20 52.00 105.00 157.00 OK
r-patched-linux-x86_64 1.1-20 10.34 92.36 102.70 OK
r-patched-solaris-x86 1.1-20 137.90 OK
r-release-linux-x86_64 1.1-20 11.14 89.43 100.57 OK
r-release-windows-ix86+x86_64 1.1-20 39.00 107.00 146.00 OK
r-release-osx-x86_64 1.1-20 OK
r-oldrel-windows-ix86+x86_64 1.1-20 39.00 136.00 175.00 OK
r-oldrel-osx-x86_64 1.1-20 NOTE

Check Details

Version: 1.1-20
Check: examples
Result: ERROR
    Running examples in ‘gap-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: makeped
    > ### Title: A function to prepare pedigrees in post-MAKEPED format
    > ### Aliases: makeped
    > ### Keywords: datagen
    >
    > ### ** Examples
    >
    > cwd <- getwd()
    > cs.dir <- file.path(path.package("gap"),"tests","kinship")
    > setwd(cs.dir)
    > dir()
     [1] "bdsmatrix.R" "gaw14.c" "gaw14.h" "gaw14frq.c" "gcta.R"
     [6] "gcta.sh" "gdef.h" "h2.R" "kin.c" "kindrv.c"
    [11] "l51.R" "l51.sas" "nghds.h" "nshd.R" "nshd.dat"
    [16] "ped.1.3.pre" "ped7.lop" "ped7.pre" "pedtodot.sh" "readme"
    [21] "setup.R" "solar.R" "solar.sh" "werner.kin" "werner.pre"
    > makeped("ped7.pre","ped7.ped",0,1,"ped7.lop")
    
     MAKEPED Version 2.21
    
     Constants in effect
    Maximum number of pedigrees 2400
    Maximum number of individuals 8000
    Maximum characters used in phenotypic data 200
    Maximum number of characters in an id 11
    
    Error in makeped("ped7.pre", "ped7.ped", 0, 1, "ped7.lop") :
    ERROR: Cannot open ped7.ped
    Calls: makeped -> .C
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1-20
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Warning in grepl("(Rerun to get|biblatex.*\\(re\\)run)", readLines(log, :
     input string 354 is invalid in this locale
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'jss.tex' failed.
    LaTeX errors:
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Extra }, or forgotten \endgroup.
    l.18 <92><a1>><df><ef><af>NJ^^C^^C~<d2><e7>^^[^^Zhl|<fb><f6><ed><e6><a3>ٶ}
     <f3><e6>M۶gffZ<b6>ll<86><bd><f6><80>^^V<dc>;^^W<f2><e9>k<f5>X<ea>w<9f><fc><e5><ef>֦...
    I've deleted a group-closing symbol because it seems to be
    spurious, as in `$x}$'. But perhaps the } is legitimate and
    ! Undefined control sequence.
    l.18 ...`<8c>QJ3<99>L^^?^^?<ff><e0><e0> ^^@PJ^^S<89>D:<9d>ƨ<ea><ec>ٳ<8b><8b><8b>W<ae>\<99>
     <9e><9e><be>r<e5><ca><de>'<b7><b7>@<e3><87>a<cb>^^^b<96><e6>]fff^...
    The control sequence at the end of the top line
    of your error message was never \def'ed. If you have
    ! Missing $ inserted.
    <inserted text>
    
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-oldrel-osx-x86_64