CRAN Package Check Results for Package lme4

Last updated on 2017-12-20 00:46:59 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-14 72.47 760.57 833.04 OK
r-devel-linux-x86_64-debian-gcc 1.1-14 OK
r-devel-linux-x86_64-fedora-clang 1.1-14 1097.18 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1-14 1096.43 NOTE
r-devel-windows-ix86+x86_64 1.1-14 199.00 1355.00 1554.00 NOTE
r-patched-linux-x86_64 1.1-14 75.01 457.20 532.21 ERROR
r-patched-solaris-x86 1.1-14 1187.30 ERROR
r-release-linux-x86_64 1.1-14 77.54 452.93 530.47 ERROR
r-release-windows-ix86+x86_64 1.1-14 151.00 684.00 835.00 ERROR
r-release-osx-x86_64 1.1-14 NOTE
r-oldrel-windows-ix86+x86_64 1.1-14 208.00 777.00 985.00 ERROR
r-oldrel-osx-x86_64 1.1-14 NOTE

Check Details

Version: 1.1-14
Check: installed package size
Result: NOTE
     installed size is 27.0Mb
     sub-directories of 1Mb or more:
     doc 1.5Mb
     libs 21.9Mb
     testdata 1.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.1-14
Check: tests
Result: ERROR
     Running ‘AAAtest-all.R’ [195s/252s]
    Running the tests in ‘tests/AAAtest-all.R’ failed.
    Complete output:
     > if(require("testthat", quietly = TRUE)) {
     + pkg <- "lme4"
     + require(pkg, character.only=TRUE, quietly=TRUE)
     + test_check(pkg)
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + cat( "package 'testthat' not available, cannot run unit tests\n" )
     + }
     ── 1. Error: basic intercept + slope '||' works (@test-doubleVertNotation.R#7)
     argument is missing, with no default
     1: expect_equivalent(lFormula(Reaction ~ Days + (Days || Subject), sleepstudy)$reTrms,
     lFormula(Reaction ~ Days + (1 | Subject) + (0 + Days | Subject), sleepstudy)$reTrms,
     ) at testthat/test-doubleVertNotation.R:7
     2: compare(act$val, exp$val, ..., check.attributes = FALSE)
     3: compare.default(act$val, exp$val, ..., check.attributes = FALSE)
     4: all.equal(x, y, ...)
     5: all.equal.list(x, y, ...)
     6: all.equal(target[[i]], current[[i]], check.attributes = check.attributes, use.names = use.names,
     ...)
     7: all.equal.numeric(target[[i]], current[[i]], check.attributes = check.attributes,
     use.names = use.names, ...)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 731 SKIPPED: 1 FAILED: 1
     1. Error: basic intercept + slope '||' works (@test-doubleVertNotation.R#7)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 1.1-14
Check: tests
Result: ERROR
     Running ‘AAAtest-all.R’ [239s/239s]
     Running ‘HSAURtrees.R’
     Running ‘REMLdev.R’
     Running ‘ST.R’
     Running ‘agridat_gotway.R’
     Running ‘bootMer.R’ [12s/12s]
     Running ‘boundary.R’ [17s/17s]
     Running ‘condVar.R’
     Running ‘confint.R’
     Running ‘devCritFun.R’
     Running ‘devfunQ.R’
     Running ‘drop.R’
     Running ‘drop1contrasts.R’
     Running ‘dynload.R’
     Running ‘elston.R’
     Running ‘evalCall.R’
     Running ‘extras.R’
     Running ‘falsezero_dorie.R’
     Running ‘fewlevels.R’ [35s/35s]
     Running ‘getME.R’
     Running ‘glmer-1.R’
     Running ‘glmerControlPass.R’ [22s/22s]
     Running ‘glmerWarn.R’
     Running ‘glmmExt.R’ [18s/18s]
     Running ‘glmmWeights.R’ [17s/17s]
     Running ‘hatvalues.R’
     Running ‘is.R’
     Running ‘lmList-tst.R’
     Running ‘lme4_nlme.R’
     Running ‘lmer-0.R’
     Running ‘lmer-1.R’ [10s/10s]
     Comparing ‘lmer-1.Rout’ to ‘lmer-1.Rout.save’ ... OK
     Running ‘lmer-conv.R’
     Running ‘lmer2_ex.R’
     Running ‘methods.R’
     Running ‘minval.R’
     Running ‘modFormula.R’
     Running ‘nbinom.R’
     Running ‘nlmer-conv.R’
     Running ‘nlmer.R’
     Comparing ‘nlmer.Rout’ to ‘nlmer.Rout.save’ ... OK
     Running ‘offset.R’
     Running ‘optimizer.R’ [11s/11s]
     Running ‘polytomous.R’
     Running ‘prLogistic.R’
     Running ‘predict.R’
     Running ‘predict_basis.R’
     Running ‘predsim.R’
     Running ‘priorWeights.R’ [15s/15s]
     Running ‘priorWeightsModComp.R’
     Running ‘profile-tst.R’ [52s/45s]
     Running ‘refit.R’ [37s/37s]
     Running ‘resids.R’
     Running ‘respiratory.R’ [16s/17s]
     Running ‘simulate.R’ [11s/11s]
     Running ‘testOptControl.R’
     Running ‘test_times.R’
     Running ‘testcolonizer.R’
     Running ‘testcrab.R’ [16s/17s]
     Running ‘throw.R’ [12s/12s]
     Running ‘utils.R’
     Running ‘varcorr.R’
     Running ‘vcov-etc.R’
    Running the tests in ‘tests/AAAtest-all.R’ failed.
    Complete output:
     > if(require("testthat", quietly = TRUE)) {
     + pkg <- "lme4"
     + require(pkg, character.only=TRUE, quietly=TRUE)
     + test_check(pkg)
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + cat( "package 'testthat' not available, cannot run unit tests\n" )
     + }
     ── 1. Error: basic intercept + slope '||' works (@test-doubleVertNotation.R#7)
     argument is missing, with no default
     1: expect_equivalent(lFormula(Reaction ~ Days + (Days || Subject), sleepstudy)$reTrms,
     lFormula(Reaction ~ Days + (1 | Subject) + (0 + Days | Subject), sleepstudy)$reTrms,
     ) at testthat/test-doubleVertNotation.R:7
     2: compare(act$val, exp$val, ..., check.attributes = FALSE)
     3: compare.default(act$val, exp$val, ..., check.attributes = FALSE)
     4: all.equal(x, y, ...)
     5: all.equal.list(x, y, ...)
     6: all.equal(target[[i]], current[[i]], check.attributes = check.attributes, use.names = use.names,
     ...)
     7: all.equal.numeric(target[[i]], current[[i]], check.attributes = check.attributes,
     use.names = use.names, ...)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 728 SKIPPED: 1 FAILED: 1
     1. Error: basic intercept + slope '||' works (@test-doubleVertNotation.R#7)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86

Version: 1.1-14
Check: tests
Result: ERROR
     Running ‘AAAtest-all.R’ [198s/254s]
    Running the tests in ‘tests/AAAtest-all.R’ failed.
    Complete output:
     > if(require("testthat", quietly = TRUE)) {
     + pkg <- "lme4"
     + require(pkg, character.only=TRUE, quietly=TRUE)
     + test_check(pkg)
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + cat( "package 'testthat' not available, cannot run unit tests\n" )
     + }
     ── 1. Error: basic intercept + slope '||' works (@test-doubleVertNotation.R#7)
     argument is missing, with no default
     1: expect_equivalent(lFormula(Reaction ~ Days + (Days || Subject), sleepstudy)$reTrms,
     lFormula(Reaction ~ Days + (1 | Subject) + (0 + Days | Subject), sleepstudy)$reTrms,
     ) at testthat/test-doubleVertNotation.R:7
     2: compare(act$val, exp$val, ..., check.attributes = FALSE)
     3: compare.default(act$val, exp$val, ..., check.attributes = FALSE)
     4: all.equal(x, y, ...)
     5: all.equal.list(x, y, ...)
     6: all.equal(target[[i]], current[[i]], check.attributes = check.attributes, use.names = use.names,
     ...)
     7: all.equal.numeric(target[[i]], current[[i]], check.attributes = check.attributes,
     use.names = use.names, ...)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 731 SKIPPED: 1 FAILED: 1
     1. Error: basic intercept + slope '||' works (@test-doubleVertNotation.R#7)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-linux-x86_64

Version: 1.1-14
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'AAAtest-all.R' [181s]
    Running the tests in 'tests/AAAtest-all.R' failed.
    Last 13 lines of output:
     2: compare(act$val, exp$val, ..., check.attributes = FALSE)
     3: compare.default(act$val, exp$val, ..., check.attributes = FALSE)
     4: all.equal(x, y, ...)
     5: all.equal.list(x, y, ...)
     6: all.equal(target[[i]], current[[i]], check.attributes = check.attributes, use.names = use.names,
     ...)
     7: all.equal.numeric(target[[i]], current[[i]], check.attributes = check.attributes,
     use.names = use.names, ...)
    
     == testthat results ===========================================================
     OK: 728 SKIPPED: 1 FAILED: 1
     1. Error: basic intercept + slope '||' works (@test-doubleVertNotation.R#7)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 1.1-14
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'AAAtest-all.R' [192s]
    Running the tests in 'tests/AAAtest-all.R' failed.
    Last 13 lines of output:
     2: compare(act$val, exp$val, ..., check.attributes = FALSE)
     3: compare.default(act$val, exp$val, ..., check.attributes = FALSE)
     4: all.equal(x, y, ...)
     5: all.equal.list(x, y, ...)
     6: all.equal(target[[i]], current[[i]], check.attributes = check.attributes, use.names = use.names,
     ...)
     7: all.equal.numeric(target[[i]], current[[i]], check.attributes = check.attributes,
     use.names = use.names, ...)
    
     == testthat results ===========================================================
     OK: 728 SKIPPED: 1 FAILED: 1
     1. Error: basic intercept + slope '||' works (@test-doubleVertNotation.R#7)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 1.1-14
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Warning in test_latex_pkg("framed", system.file("misc", "framed.sty", package = "knitr")) :
     unable to find LaTeX package 'framed'; will use a copy from knitr
    Loading required package: Matrix
    Computing profile confidence intervals ...
    Warning in if (parm == "theta_") { :
     the condition has length > 1 and only the first element will be used
    Warning in if (parm == "beta_") { :
     the condition has length > 1 and only the first element will be used
    Computing bootstrap confidence intervals ...
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'lmer.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `blkarray.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.62 \usepackage
     {array}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.1-14
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'AAAtest-all.R' [211s]
    Running the tests in 'tests/AAAtest-all.R' failed.
    Last 13 lines of output:
     2: compare(act$val, exp$val, ..., check.attributes = FALSE)
     3: compare.default(act$val, exp$val, ..., check.attributes = FALSE)
     4: all.equal(x, y, ...)
     5: all.equal.list(x, y, ...)
     6: all.equal(target[[i]], current[[i]], check.attributes = check.attributes, use.names = use.names,
     ...)
     7: all.equal.numeric(target[[i]], current[[i]], check.attributes = check.attributes,
     use.names = use.names, ...)
    
     == testthat results ===========================================================
     OK: 728 SKIPPED: 1 FAILED: 1
     1. Error: basic intercept + slope '||' works (@test-doubleVertNotation.R#7)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.1-14
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'AAAtest-all.R' [223s]
    Running the tests in 'tests/AAAtest-all.R' failed.
    Last 13 lines of output:
     2: compare(act$val, exp$val, ..., check.attributes = FALSE)
     3: compare.default(act$val, exp$val, ..., check.attributes = FALSE)
     4: all.equal(x, y, ...)
     5: all.equal.list(x, y, ...)
     6: all.equal(target[[i]], current[[i]], check.attributes = check.attributes, use.names = use.names,
     ...)
     7: all.equal.numeric(target[[i]], current[[i]], check.attributes = check.attributes,
     use.names = use.names, ...)
    
     == testthat results ===========================================================
     OK: 728 SKIPPED: 1 FAILED: 1
     1. Error: basic intercept + slope '||' works (@test-doubleVertNotation.R#7)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.1-14
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
     input string 785 is invalid in this locale
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'lmer.tex' failed.
    LaTeX errors:
    ! Undefined control sequence.
    l.15 x<9c><ed>\Mh
     ^^TK^^P<ae><97>(q$<ee>؈!.L6^^L/($oYX^^Hx^^H<eb>!<a0>'o<de><<eb>ٓ^^A/<a2>O<f0>]ċ^^G<f5>^^]<84><e7>A...
    The control sequence at the end of the top line
    of your error message was never \def'ed. If you have
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Missing $ inserted.
    <inserted text>
     $
    l.16 ...F<a0><ba>v<ed>Zggg<ad>V{<fd><fa>5^^Q9<8e>388866<a6><94><8a><e3>^^X<fd>^^]<c7><c1><83><ae>^
     <bd><9a>J<a5>l<db>v^^\^^G<9f>J<a9><87>^^O^^_<c6>q|...
    ! Extra }, or forgotten $.
    l.17 Ԓ<da>[}
     <b8>ӄ<f6><a0><9c>0^^L<89>(<9b><cd><e2>^^A<98><ce>0^^L<0b><85>^^BOm<b9>\^^^^^Z^^Z<8a><a2><88><a7>?<9b><cd>"@a<ce>0<8e>eYP{<a1>P<c0>O<<c8><e3>...
    I've deleted a group-closing
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-oldrel-osx-x86_64